Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0903 and Atu0904 are separated by 278 nucleotides Atu0904 and Atu0905 are separated by 122 nucleotides Atu0905 and Atu0906 are separated by 225 nucleotides Atu0906 and Atu0907 are separated by 102 nucleotides
Atu0903: Atu0903 - hypothetical protein, at 894,738 to 895,598
Atu0903
Atu0904: Atu0904 - hypothetical protein, at 895,877 to 896,287
Atu0904
Atu0905: Atu0905 - dnaK suppressor protein, at 896,410 to 896,730
Atu0905
Atu0906: Atu0906 - Hemolysin III, at 896,956 to 897,624
Atu0906
Atu0907: Atu0907 - Phosphinothricin acetyltransferase, at 897,727 to 898,224
Atu0907
Position (kb) 896
897 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 895.470 kb on + strand, within Atu0903 at 895.550 kb on + strand at 895.554 kb on + strand at 895.674 kb on + strand at 895.807 kb on - strand at 896.083 kb on + strand, within Atu0904 at 896.083 kb on + strand, within Atu0904 at 896.091 kb on - strand, within Atu0904 at 896.202 kb on + strand, within Atu0904 at 896.210 kb on - strand, within Atu0904 at 896.458 kb on + strand, within Atu0905 at 896.515 kb on + strand, within Atu0905 at 896.569 kb on - strand, within Atu0905 at 896.579 kb on + strand, within Atu0905 at 896.676 kb on + strand, within Atu0905 at 896.811 kb on - strand at 896.894 kb on + strand at 896.902 kb on - strand at 896.902 kb on - strand at 896.954 kb on - strand at 897.082 kb on + strand, within Atu0906 at 897.117 kb on + strand, within Atu0906 at 897.117 kb on + strand, within Atu0906 at 897.245 kb on + strand, within Atu0906 at 897.245 kb on + strand, within Atu0906 at 897.245 kb on + strand, within Atu0906 at 897.277 kb on - strand, within Atu0906 at 897.298 kb on - strand, within Atu0906 at 897.306 kb on + strand, within Atu0906 at 897.367 kb on - strand, within Atu0906 at 897.415 kb on - strand, within Atu0906 at 897.425 kb on - strand, within Atu0906 at 897.426 kb on - strand, within Atu0906 at 897.480 kb on + strand, within Atu0906 at 897.525 kb on - strand, within Atu0906 at 897.638 kb on + strand at 897.695 kb on - strand at 897.723 kb on - strand at 897.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 895,470 + Atu0903 0.85 -1.0 895,550 + +0.2 895,554 + -0.5 895,674 + +0.9 895,807 - +0.4 896,083 + Atu0904 0.50 -0.8 896,083 + Atu0904 0.50 +1.9 896,091 - Atu0904 0.52 +0.8 896,202 + Atu0904 0.79 +1.3 896,210 - Atu0904 0.81 +0.6 896,458 + Atu0905 0.15 +2.7 896,515 + Atu0905 0.33 -0.3 896,569 - Atu0905 0.50 -0.3 896,579 + Atu0905 0.53 +0.3 896,676 + Atu0905 0.83 +0.7 896,811 - +0.1 896,894 + +1.2 896,902 - -0.6 896,902 - +0.0 896,954 - -1.0 897,082 + Atu0906 0.19 +0.4 897,117 + Atu0906 0.24 -0.2 897,117 + Atu0906 0.24 -0.0 897,245 + Atu0906 0.43 -2.9 897,245 + Atu0906 0.43 -1.4 897,245 + Atu0906 0.43 -1.2 897,277 - Atu0906 0.48 -0.9 897,298 - Atu0906 0.51 -0.8 897,306 + Atu0906 0.52 -1.2 897,367 - Atu0906 0.61 +1.2 897,415 - Atu0906 0.69 -0.3 897,425 - Atu0906 0.70 +0.3 897,426 - Atu0906 0.70 -3.0 897,480 + Atu0906 0.78 -0.0 897,525 - Atu0906 0.85 +0.3 897,638 + -0.0 897,695 - +0.2 897,723 - -0.7 897,723 - -1.0
Or see this region's nucleotide sequence