Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0841 and Atu0842 are separated by 37 nucleotides Atu0842 and Atu0843 are separated by 163 nucleotides Atu0843 and Atu0844 are separated by 168 nucleotides
Atu0841: Atu0841 - hypothetical protein, at 841,513 to 842,478
Atu0841
Atu0842: Atu0842 - hypothetical protein, at 842,516 to 843,304
Atu0842
Atu0843: Atu0843 - P type cation (metal) transporter, ATPase component, at 843,468 to 846,185
Atu0843
Atu0844: Atu0844 - hypothetical protein, at 846,354 to 847,262
Atu0844
Position (kb) 843
844
845
846
847 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 842.506 kb on - strand at 842.522 kb on - strand at 842.777 kb on - strand, within Atu0842 at 843.005 kb on + strand, within Atu0842 at 843.055 kb on + strand, within Atu0842 at 843.268 kb on + strand at 843.298 kb on + strand at 843.502 kb on + strand at 843.508 kb on + strand at 843.589 kb on + strand at 843.597 kb on - strand at 843.752 kb on - strand, within Atu0843 at 843.814 kb on - strand, within Atu0843 at 843.879 kb on + strand, within Atu0843 at 843.881 kb on + strand, within Atu0843 at 843.888 kb on + strand, within Atu0843 at 843.895 kb on - strand, within Atu0843 at 843.970 kb on + strand, within Atu0843 at 843.993 kb on + strand, within Atu0843 at 844.036 kb on + strand, within Atu0843 at 844.071 kb on + strand, within Atu0843 at 844.165 kb on + strand, within Atu0843 at 844.168 kb on + strand, within Atu0843 at 844.213 kb on - strand, within Atu0843 at 844.313 kb on + strand, within Atu0843 at 844.383 kb on - strand, within Atu0843 at 844.444 kb on + strand, within Atu0843 at 844.498 kb on + strand, within Atu0843 at 844.498 kb on + strand, within Atu0843 at 844.498 kb on + strand, within Atu0843 at 844.535 kb on + strand, within Atu0843 at 844.535 kb on + strand, within Atu0843 at 844.541 kb on + strand, within Atu0843 at 844.543 kb on - strand, within Atu0843 at 844.594 kb on + strand, within Atu0843 at 844.636 kb on - strand, within Atu0843 at 844.639 kb on + strand, within Atu0843 at 844.647 kb on + strand, within Atu0843 at 844.681 kb on + strand, within Atu0843 at 844.750 kb on - strand, within Atu0843 at 844.854 kb on + strand, within Atu0843 at 844.871 kb on - strand, within Atu0843 at 844.893 kb on - strand, within Atu0843 at 844.937 kb on - strand, within Atu0843 at 844.955 kb on - strand, within Atu0843 at 844.966 kb on + strand, within Atu0843 at 845.064 kb on + strand, within Atu0843 at 845.109 kb on - strand, within Atu0843 at 845.148 kb on + strand, within Atu0843 at 845.173 kb on + strand, within Atu0843 at 845.228 kb on + strand, within Atu0843 at 845.253 kb on + strand, within Atu0843 at 845.261 kb on - strand, within Atu0843 at 845.295 kb on + strand, within Atu0843 at 845.320 kb on - strand, within Atu0843 at 845.330 kb on - strand, within Atu0843 at 845.348 kb on + strand, within Atu0843 at 845.363 kb on - strand, within Atu0843 at 845.424 kb on - strand, within Atu0843 at 845.434 kb on - strand, within Atu0843 at 845.436 kb on + strand, within Atu0843 at 845.490 kb on - strand, within Atu0843 at 845.587 kb on + strand, within Atu0843 at 845.668 kb on + strand, within Atu0843 at 845.671 kb on - strand, within Atu0843 at 845.689 kb on + strand, within Atu0843 at 845.689 kb on + strand, within Atu0843 at 845.738 kb on + strand, within Atu0843 at 845.763 kb on + strand, within Atu0843 at 845.794 kb on - strand, within Atu0843 at 845.927 kb on - strand at 846.006 kb on - strand at 846.074 kb on - strand at 846.095 kb on + strand at 846.095 kb on + strand at 846.356 kb on - strand at 846.396 kb on + strand at 846.406 kb on - strand at 846.411 kb on - strand at 846.465 kb on - strand, within Atu0844 at 846.581 kb on + strand, within Atu0844 at 846.581 kb on + strand, within Atu0844 at 846.589 kb on - strand, within Atu0844 at 846.633 kb on - strand, within Atu0844 at 846.655 kb on + strand, within Atu0844 at 846.656 kb on - strand, within Atu0844 at 846.661 kb on - strand, within Atu0844 at 846.663 kb on - strand, within Atu0844 at 846.699 kb on - strand, within Atu0844 at 846.727 kb on - strand, within Atu0844 at 846.799 kb on + strand, within Atu0844 at 846.805 kb on + strand, within Atu0844 at 846.852 kb on + strand, within Atu0844 at 846.856 kb on + strand, within Atu0844 at 846.941 kb on - strand, within Atu0844 at 846.968 kb on - strand, within Atu0844 at 847.007 kb on + strand, within Atu0844 at 847.027 kb on - strand, within Atu0844 at 847.073 kb on - strand, within Atu0844
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 842,506 - +0.5 842,522 - +1.7 842,777 - Atu0842 0.33 -0.6 843,005 + Atu0842 0.62 -0.9 843,055 + Atu0842 0.68 -0.4 843,268 + +1.8 843,298 + +0.4 843,502 + -0.5 843,508 + -0.2 843,589 + -1.2 843,597 - -2.0 843,752 - Atu0843 0.10 -1.2 843,814 - Atu0843 0.13 +1.7 843,879 + Atu0843 0.15 -1.8 843,881 + Atu0843 0.15 -3.8 843,888 + Atu0843 0.15 -1.6 843,895 - Atu0843 0.16 -3.9 843,970 + Atu0843 0.18 -0.7 843,993 + Atu0843 0.19 +1.4 844,036 + Atu0843 0.21 -2.6 844,071 + Atu0843 0.22 -2.5 844,165 + Atu0843 0.26 -0.3 844,168 + Atu0843 0.26 +0.9 844,213 - Atu0843 0.27 +1.7 844,313 + Atu0843 0.31 +4.0 844,383 - Atu0843 0.34 -2.3 844,444 + Atu0843 0.36 -2.2 844,498 + Atu0843 0.38 +0.7 844,498 + Atu0843 0.38 +1.7 844,498 + Atu0843 0.38 -3.2 844,535 + Atu0843 0.39 -2.7 844,535 + Atu0843 0.39 -4.6 844,541 + Atu0843 0.39 -3.5 844,543 - Atu0843 0.40 -3.4 844,594 + Atu0843 0.41 -0.5 844,636 - Atu0843 0.43 -0.3 844,639 + Atu0843 0.43 -2.3 844,647 + Atu0843 0.43 -1.5 844,681 + Atu0843 0.45 -1.3 844,750 - Atu0843 0.47 -3.9 844,854 + Atu0843 0.51 +2.3 844,871 - Atu0843 0.52 -3.7 844,893 - Atu0843 0.52 +0.1 844,937 - Atu0843 0.54 -0.5 844,955 - Atu0843 0.55 -1.5 844,966 + Atu0843 0.55 -2.1 845,064 + Atu0843 0.59 -1.3 845,109 - Atu0843 0.60 -3.4 845,148 + Atu0843 0.62 +0.4 845,173 + Atu0843 0.63 -3.2 845,228 + Atu0843 0.65 -1.1 845,253 + Atu0843 0.66 -2.3 845,261 - Atu0843 0.66 -2.9 845,295 + Atu0843 0.67 +1.1 845,320 - Atu0843 0.68 -1.1 845,330 - Atu0843 0.69 -2.7 845,348 + Atu0843 0.69 -1.7 845,363 - Atu0843 0.70 +0.1 845,424 - Atu0843 0.72 -0.6 845,434 - Atu0843 0.72 -3.8 845,436 + Atu0843 0.72 -0.5 845,490 - Atu0843 0.74 -2.2 845,587 + Atu0843 0.78 -3.6 845,668 + Atu0843 0.81 -2.0 845,671 - Atu0843 0.81 -0.5 845,689 + Atu0843 0.82 -0.8 845,689 + Atu0843 0.82 -4.5 845,738 + Atu0843 0.84 -1.5 845,763 + Atu0843 0.84 -1.2 845,794 - Atu0843 0.86 +0.4 845,927 - -4.7 846,006 - +0.3 846,074 - -1.4 846,095 + -2.9 846,095 + -1.4 846,356 - -0.9 846,396 + +0.4 846,406 - -0.2 846,411 - +1.2 846,465 - Atu0844 0.12 -0.1 846,581 + Atu0844 0.25 -2.1 846,581 + Atu0844 0.25 +1.2 846,589 - Atu0844 0.26 -0.3 846,633 - Atu0844 0.31 -1.7 846,655 + Atu0844 0.33 -0.2 846,656 - Atu0844 0.33 +0.7 846,661 - Atu0844 0.34 -0.1 846,663 - Atu0844 0.34 -0.3 846,699 - Atu0844 0.38 -0.1 846,727 - Atu0844 0.41 -1.4 846,799 + Atu0844 0.49 +1.3 846,805 + Atu0844 0.50 +0.6 846,852 + Atu0844 0.55 +2.1 846,856 + Atu0844 0.55 +0.9 846,941 - Atu0844 0.65 -0.2 846,968 - Atu0844 0.68 -0.7 847,007 + Atu0844 0.72 -0.1 847,027 - Atu0844 0.74 -1.4 847,073 - Atu0844 0.79 -0.3
Or see this region's nucleotide sequence