Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0366 and Atu0367 are separated by 44 nucleotides Atu0367 and Atu0368 overlap by 1 nucleotides Atu0368 and Atu0369 are separated by 19 nucleotides Atu0369 and Atu0370 overlap by 17 nucleotides
Atu0366: Atu0366 - polypeptide deformylase, at 360,846 to 361,358
Atu0366
Atu0367: Atu0367 - methionyl-tRNA formyl transferase, at 361,403 to 362,338
Atu0367
Atu0368: Atu0368 - tRNA pseudouridine synthase I, at 362,338 to 363,138
Atu0368
Atu0369: Atu0369 - hypothetical protein, at 363,158 to 363,754
Atu0369
Atu0370: Atu0370 - succinyl-diaminopimelate desuccinylase, at 363,738 to 364,934
Atu0370
Position (kb) 362
363
364 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 361.376 kb on + strand at 361.383 kb on + strand at 362.327 kb on + strand at 362.330 kb on - strand at 362.569 kb on + strand, within Atu0368 at 362.569 kb on + strand, within Atu0368 at 362.609 kb on - strand, within Atu0368 at 362.609 kb on - strand, within Atu0368 at 362.609 kb on - strand, within Atu0368 at 362.609 kb on - strand, within Atu0368 at 362.659 kb on + strand, within Atu0368 at 362.774 kb on - strand, within Atu0368 at 362.819 kb on - strand, within Atu0368 at 362.829 kb on - strand, within Atu0368 at 362.861 kb on + strand, within Atu0368 at 362.931 kb on + strand, within Atu0368 at 362.951 kb on + strand, within Atu0368 at 362.975 kb on + strand, within Atu0368 at 363.137 kb on + strand at 363.145 kb on - strand at 363.233 kb on - strand, within Atu0369 at 363.430 kb on - strand, within Atu0369 at 363.459 kb on + strand, within Atu0369 at 363.560 kb on - strand, within Atu0369 at 363.567 kb on - strand, within Atu0369 at 363.613 kb on - strand, within Atu0369 at 363.663 kb on + strand, within Atu0369 at 363.730 kb on + strand at 363.730 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 361,376 + -0.5 361,383 + -1.3 362,327 + +0.0 362,330 - -2.0 362,569 + Atu0368 0.29 -0.9 362,569 + Atu0368 0.29 -4.4 362,609 - Atu0368 0.34 -2.9 362,609 - Atu0368 0.34 -0.6 362,609 - Atu0368 0.34 -1.0 362,609 - Atu0368 0.34 -1.8 362,659 + Atu0368 0.40 +0.0 362,774 - Atu0368 0.54 -2.1 362,819 - Atu0368 0.60 -3.0 362,829 - Atu0368 0.61 -0.3 362,861 + Atu0368 0.65 -0.8 362,931 + Atu0368 0.74 -1.4 362,951 + Atu0368 0.77 +0.3 362,975 + Atu0368 0.80 -0.2 363,137 + -0.3 363,145 - +0.3 363,233 - Atu0369 0.13 -0.2 363,430 - Atu0369 0.46 +1.0 363,459 + Atu0369 0.50 -0.3 363,560 - Atu0369 0.67 +1.0 363,567 - Atu0369 0.69 -0.2 363,613 - Atu0369 0.76 -0.4 363,663 + Atu0369 0.85 +2.0 363,730 + +0.4 363,730 + +0.2
Or see this region's nucleotide sequence