Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0308 and Atu0309 are separated by 109 nucleotides Atu0309 and Atu0310 are separated by 242 nucleotides
Atu0308: Atu0308 - ABC transporter, nucleotide binding/ATPase protein (sn-Glycerol-3-phosphate), at 300,340 to 301,440
Atu0308
Atu0309: Atu0309 - hypothetical protein, at 301,550 to 302,062
Atu0309
Atu0310: Atu0310 - glutathione synthetase, at 302,305 to 303,264
Atu0310
Position (kb) 301
302
303 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 300.591 kb on - strand, within Atu0308 at 300.684 kb on + strand, within Atu0308 at 300.716 kb on - strand, within Atu0308 at 300.727 kb on - strand, within Atu0308 at 300.742 kb on + strand, within Atu0308 at 300.742 kb on + strand, within Atu0308 at 300.819 kb on + strand, within Atu0308 at 300.825 kb on + strand, within Atu0308 at 300.833 kb on - strand, within Atu0308 at 300.854 kb on - strand, within Atu0308 at 300.867 kb on + strand, within Atu0308 at 300.888 kb on + strand, within Atu0308 at 300.907 kb on - strand, within Atu0308 at 300.921 kb on - strand, within Atu0308 at 300.924 kb on + strand, within Atu0308 at 300.924 kb on + strand, within Atu0308 at 300.924 kb on + strand, within Atu0308 at 300.924 kb on + strand, within Atu0308 at 300.924 kb on + strand, within Atu0308 at 300.924 kb on + strand, within Atu0308 at 300.932 kb on - strand, within Atu0308 at 300.932 kb on - strand, within Atu0308 at 300.932 kb on - strand, within Atu0308 at 300.979 kb on + strand, within Atu0308 at 300.984 kb on + strand, within Atu0308 at 300.996 kb on + strand, within Atu0308 at 301.004 kb on - strand, within Atu0308 at 301.013 kb on + strand, within Atu0308 at 301.018 kb on + strand, within Atu0308 at 301.019 kb on - strand, within Atu0308 at 301.070 kb on + strand, within Atu0308 at 301.078 kb on - strand, within Atu0308 at 301.147 kb on - strand, within Atu0308 at 301.195 kb on + strand, within Atu0308 at 301.217 kb on + strand, within Atu0308 at 301.225 kb on - strand, within Atu0308 at 301.373 kb on + strand at 301.407 kb on - strand at 301.425 kb on + strand at 301.434 kb on + strand at 301.436 kb on + strand at 301.442 kb on - strand at 301.576 kb on + strand at 301.629 kb on + strand, within Atu0309 at 301.631 kb on + strand, within Atu0309 at 301.685 kb on + strand, within Atu0309 at 301.721 kb on + strand, within Atu0309 at 301.721 kb on + strand, within Atu0309 at 301.721 kb on + strand, within Atu0309 at 301.721 kb on + strand, within Atu0309 at 301.721 kb on + strand, within Atu0309 at 301.727 kb on - strand, within Atu0309 at 301.729 kb on - strand, within Atu0309 at 301.729 kb on - strand, within Atu0309 at 301.729 kb on - strand, within Atu0309 at 301.729 kb on - strand, within Atu0309 at 301.729 kb on - strand, within Atu0309 at 301.744 kb on + strand, within Atu0309 at 301.744 kb on + strand, within Atu0309 at 301.744 kb on + strand, within Atu0309 at 301.752 kb on - strand, within Atu0309 at 301.763 kb on + strand, within Atu0309 at 301.768 kb on + strand, within Atu0309 at 301.783 kb on - strand, within Atu0309 at 301.830 kb on - strand, within Atu0309 at 301.873 kb on - strand, within Atu0309 at 301.888 kb on + strand, within Atu0309 at 301.901 kb on - strand, within Atu0309 at 301.901 kb on - strand, within Atu0309 at 301.935 kb on + strand, within Atu0309 at 301.994 kb on + strand, within Atu0309 at 301.999 kb on + strand, within Atu0309 at 301.999 kb on + strand, within Atu0309 at 302.000 kb on + strand, within Atu0309 at 302.007 kb on - strand, within Atu0309 at 302.043 kb on + strand at 302.043 kb on + strand at 302.051 kb on - strand at 302.051 kb on - strand at 302.057 kb on + strand at 302.076 kb on - strand at 302.093 kb on + strand at 302.093 kb on + strand at 302.096 kb on - strand at 302.096 kb on - strand at 302.101 kb on + strand at 302.218 kb on + strand at 302.218 kb on + strand at 302.255 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 300,591 - Atu0308 0.23 +0.3 300,684 + Atu0308 0.31 +1.0 300,716 - Atu0308 0.34 -0.7 300,727 - Atu0308 0.35 +1.3 300,742 + Atu0308 0.37 +0.4 300,742 + Atu0308 0.37 -0.5 300,819 + Atu0308 0.44 +0.9 300,825 + Atu0308 0.44 +0.5 300,833 - Atu0308 0.45 -2.5 300,854 - Atu0308 0.47 -1.3 300,867 + Atu0308 0.48 +0.6 300,888 + Atu0308 0.50 -0.8 300,907 - Atu0308 0.51 -0.2 300,921 - Atu0308 0.53 -1.2 300,924 + Atu0308 0.53 +0.5 300,924 + Atu0308 0.53 -2.4 300,924 + Atu0308 0.53 -0.5 300,924 + Atu0308 0.53 -1.3 300,924 + Atu0308 0.53 +0.3 300,924 + Atu0308 0.53 +0.5 300,932 - Atu0308 0.54 -2.8 300,932 - Atu0308 0.54 +0.3 300,932 - Atu0308 0.54 +1.1 300,979 + Atu0308 0.58 -0.3 300,984 + Atu0308 0.58 +1.6 300,996 + Atu0308 0.60 +0.2 301,004 - Atu0308 0.60 +0.6 301,013 + Atu0308 0.61 +1.3 301,018 + Atu0308 0.62 +1.8 301,019 - Atu0308 0.62 -0.2 301,070 + Atu0308 0.66 -1.6 301,078 - Atu0308 0.67 +0.9 301,147 - Atu0308 0.73 -1.1 301,195 + Atu0308 0.78 -2.3 301,217 + Atu0308 0.80 -1.1 301,225 - Atu0308 0.80 +1.5 301,373 + +0.5 301,407 - -0.5 301,425 + +0.0 301,434 + +0.0 301,436 + +1.3 301,442 - +1.2 301,576 + +2.1 301,629 + Atu0309 0.15 -1.6 301,631 + Atu0309 0.16 -1.0 301,685 + Atu0309 0.26 +0.1 301,721 + Atu0309 0.33 -1.9 301,721 + Atu0309 0.33 -1.4 301,721 + Atu0309 0.33 +0.5 301,721 + Atu0309 0.33 -0.3 301,721 + Atu0309 0.33 +5.3 301,727 - Atu0309 0.35 +0.6 301,729 - Atu0309 0.35 -0.7 301,729 - Atu0309 0.35 -0.1 301,729 - Atu0309 0.35 -0.3 301,729 - Atu0309 0.35 +1.9 301,729 - Atu0309 0.35 +0.8 301,744 + Atu0309 0.38 -1.9 301,744 + Atu0309 0.38 -1.5 301,744 + Atu0309 0.38 +0.3 301,752 - Atu0309 0.39 -0.4 301,763 + Atu0309 0.42 +0.6 301,768 + Atu0309 0.42 -1.4 301,783 - Atu0309 0.45 -0.7 301,830 - Atu0309 0.55 -0.1 301,873 - Atu0309 0.63 -2.3 301,888 + Atu0309 0.66 +0.3 301,901 - Atu0309 0.68 +1.5 301,901 - Atu0309 0.68 +0.1 301,935 + Atu0309 0.75 -1.1 301,994 + Atu0309 0.87 -0.0 301,999 + Atu0309 0.88 +0.6 301,999 + Atu0309 0.88 +1.2 302,000 + Atu0309 0.88 +0.8 302,007 - Atu0309 0.89 +0.2 302,043 + +0.3 302,043 + -0.4 302,051 - +0.9 302,051 - +0.5 302,057 + -0.1 302,076 - +0.8 302,093 + +0.1 302,093 + -0.5 302,096 - -0.2 302,096 - +0.2 302,101 + +0.5 302,218 + +0.6 302,218 + +0.7 302,255 + -0.3
Or see this region's nucleotide sequence