Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5076 and Atu5077 are separated by 173 nucleotides Atu5077 and Atu8057 are separated by 412 nucleotides Atu8057 and Atu5078 are separated by 262 nucleotides
Atu5076: Atu5076 - hypothetical protein, at 75,947 to 76,975
Atu5076
Atu5077: Atu5077 - hypothetical protein, at 77,149 to 77,502
Atu5077
Atu8057: Atu8057 - hypothetical protein, at 77,915 to 78,244
Atu8057
Atu5078: Atu5078 - LacI family transcription regulator, at 78,507 to 79,568
Atu5078
Position (kb) 77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 76.934 kb on + strand at 76.937 kb on - strand at 76.942 kb on - strand at 76.942 kb on - strand at 76.942 kb on - strand at 77.068 kb on + strand at 77.094 kb on + strand at 77.196 kb on + strand, within Atu5077 at 77.196 kb on + strand, within Atu5077 at 77.204 kb on - strand, within Atu5077 at 77.204 kb on - strand, within Atu5077 at 77.211 kb on + strand, within Atu5077 at 77.219 kb on - strand, within Atu5077 at 77.281 kb on - strand, within Atu5077 at 77.294 kb on + strand, within Atu5077 at 77.302 kb on - strand, within Atu5077 at 77.315 kb on + strand, within Atu5077 at 77.366 kb on - strand, within Atu5077 at 77.391 kb on - strand, within Atu5077 at 77.392 kb on + strand, within Atu5077 at 77.392 kb on + strand, within Atu5077 at 77.400 kb on - strand, within Atu5077 at 77.400 kb on - strand, within Atu5077 at 77.455 kb on - strand, within Atu5077 at 77.476 kb on + strand at 77.484 kb on - strand at 77.504 kb on - strand at 77.511 kb on + strand at 77.511 kb on + strand at 77.511 kb on + strand at 77.511 kb on + strand at 77.519 kb on - strand at 77.519 kb on - strand at 77.519 kb on - strand at 77.519 kb on - strand at 77.555 kb on - strand at 77.588 kb on - strand at 77.628 kb on - strand at 77.724 kb on + strand at 77.758 kb on + strand at 77.758 kb on + strand at 77.758 kb on + strand at 77.758 kb on + strand at 77.766 kb on - strand at 77.766 kb on - strand at 77.815 kb on + strand at 77.911 kb on - strand at 78.056 kb on - strand, within Atu8057 at 78.115 kb on - strand, within Atu8057 at 78.172 kb on + strand, within Atu8057 at 78.192 kb on - strand, within Atu8057 at 78.192 kb on - strand, within Atu8057 at 78.231 kb on + strand at 78.239 kb on - strand at 78.294 kb on + strand at 78.294 kb on + strand at 78.294 kb on + strand at 78.309 kb on + strand at 78.309 kb on + strand at 78.309 kb on + strand at 78.314 kb on + strand at 78.321 kb on - strand at 78.354 kb on + strand at 78.379 kb on + strand at 78.539 kb on + strand at 78.588 kb on + strand at 78.588 kb on + strand at 78.605 kb on + strand at 78.733 kb on + strand, within Atu5078 at 78.825 kb on + strand, within Atu5078 at 78.851 kb on + strand, within Atu5078 at 78.871 kb on + strand, within Atu5078 at 78.994 kb on + strand, within Atu5078 at 78.994 kb on + strand, within Atu5078 at 79.065 kb on + strand, within Atu5078 at 79.137 kb on + strand, within Atu5078 at 79.154 kb on + strand, within Atu5078 at 79.164 kb on + strand, within Atu5078 at 79.222 kb on + strand, within Atu5078
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 76,934 + +0.5 76,937 - -2.1 76,942 - -0.6 76,942 - -1.2 76,942 - -0.2 77,068 + -0.2 77,094 + +0.7 77,196 + Atu5077 0.13 -0.3 77,196 + Atu5077 0.13 -2.8 77,204 - Atu5077 0.16 +1.2 77,204 - Atu5077 0.16 -0.9 77,211 + Atu5077 0.18 +1.3 77,219 - Atu5077 0.20 -1.4 77,281 - Atu5077 0.37 -0.4 77,294 + Atu5077 0.41 -0.2 77,302 - Atu5077 0.43 -0.6 77,315 + Atu5077 0.47 -2.5 77,366 - Atu5077 0.61 -0.3 77,391 - Atu5077 0.68 +0.6 77,392 + Atu5077 0.69 -0.9 77,392 + Atu5077 0.69 +1.1 77,400 - Atu5077 0.71 -0.4 77,400 - Atu5077 0.71 -1.0 77,455 - Atu5077 0.86 +0.7 77,476 + -0.2 77,484 - +1.7 77,504 - +1.7 77,511 + +1.2 77,511 + +1.3 77,511 + +0.9 77,511 + +0.6 77,519 - +0.2 77,519 - +0.4 77,519 - -1.1 77,519 - -1.1 77,555 - +0.6 77,588 - +2.5 77,628 - -1.0 77,724 + +0.1 77,758 + -0.3 77,758 + -0.3 77,758 + -0.4 77,758 + +0.6 77,766 - -1.5 77,766 - +0.6 77,815 + +0.9 77,911 - -0.1 78,056 - Atu8057 0.43 +2.7 78,115 - Atu8057 0.61 +0.9 78,172 + Atu8057 0.78 -0.6 78,192 - Atu8057 0.84 +0.2 78,192 - Atu8057 0.84 -1.1 78,231 + +0.5 78,239 - -2.1 78,294 + -3.1 78,294 + -0.3 78,294 + -0.2 78,309 + -1.3 78,309 + +0.9 78,309 + -2.2 78,314 + -1.4 78,321 - -0.2 78,354 + -0.4 78,379 + +0.8 78,539 + +0.0 78,588 + -0.2 78,588 + -1.6 78,605 + +0.6 78,733 + Atu5078 0.21 +1.0 78,825 + Atu5078 0.30 -2.5 78,851 + Atu5078 0.32 +0.4 78,871 + Atu5078 0.34 -0.2 78,994 + Atu5078 0.46 -0.4 78,994 + Atu5078 0.46 -0.5 79,065 + Atu5078 0.53 +0.8 79,137 + Atu5078 0.59 -3.4 79,154 + Atu5078 0.61 +1.3 79,164 + Atu5078 0.62 -0.2 79,222 + Atu5078 0.67 +2.0
Or see this region's nucleotide sequence