Strain Fitness in Agrobacterium fabrum C58 around Atu8052

Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5489 and Atu5490 are separated by 124 nucleotidesAtu5490 and Atu8052 are separated by 191 nucleotidesAtu8052 and Atu5491 are separated by 40 nucleotides Atu5489: Atu5489 - hypothetical protein, at 479,072 to 479,299 Atu5489 Atu5490: Atu5490 - ECF family RNA polymerase sigma factor, at 479,424 to 479,966 Atu5490 Atu8052: Atu8052 - hypothetical protein, at 480,158 to 480,295 Atu8052 Atu5491: Atu5491 - catalase C, at 480,336 to 482,477 Atu5491 Position (kb) 480 481Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 479.330 kb on - strandat 479.434 kb on + strandat 479.442 kb on - strandat 479.476 kb on - strandat 479.608 kb on + strand, within Atu5490at 479.617 kb on - strand, within Atu5490at 479.624 kb on - strand, within Atu5490at 479.627 kb on - strand, within Atu5490at 479.644 kb on + strand, within Atu5490at 479.660 kb on + strand, within Atu5490at 479.660 kb on + strand, within Atu5490at 479.668 kb on - strand, within Atu5490at 479.668 kb on - strand, within Atu5490at 479.668 kb on - strand, within Atu5490at 479.668 kb on - strand, within Atu5490at 479.668 kb on - strand, within Atu5490at 479.702 kb on + strand, within Atu5490at 479.716 kb on - strand, within Atu5490at 479.723 kb on - strand, within Atu5490at 479.775 kb on + strand, within Atu5490at 479.778 kb on - strand, within Atu5490at 479.786 kb on + strand, within Atu5490at 479.808 kb on + strand, within Atu5490at 479.905 kb on + strand, within Atu5490at 479.931 kb on + strandat 480.015 kb on + strandat 480.066 kb on - strandat 480.066 kb on - strandat 480.224 kb on + strand, within Atu8052at 480.242 kb on + strand, within Atu8052at 480.310 kb on + strandat 480.315 kb on + strandat 480.389 kb on - strandat 480.428 kb on + strandat 480.436 kb on - strandat 480.436 kb on - strandat 480.448 kb on + strandat 480.504 kb on + strandat 480.512 kb on - strandat 480.598 kb on - strand, within Atu5491at 480.598 kb on - strand, within Atu5491at 480.598 kb on - strand, within Atu5491at 480.605 kb on + strand, within Atu5491at 480.613 kb on - strand, within Atu5491at 480.613 kb on - strand, within Atu5491at 480.618 kb on - strand, within Atu5491at 480.647 kb on - strand, within Atu5491at 480.734 kb on - strand, within Atu5491at 480.759 kb on + strand, within Atu5491at 480.762 kb on - strand, within Atu5491at 480.767 kb on - strand, within Atu5491at 480.784 kb on - strand, within Atu5491at 481.017 kb on - strand, within Atu5491at 481.032 kb on + strand, within Atu5491at 481.086 kb on - strand, within Atu5491

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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479,330 - +2.4
479,434 + +0.4
479,442 - +1.2
479,476 - +1.4
479,608 + Atu5490 0.34 -0.5
479,617 - Atu5490 0.36 +1.4
479,624 - Atu5490 0.37 -0.6
479,627 - Atu5490 0.37 -0.3
479,644 + Atu5490 0.41 -0.1
479,660 + Atu5490 0.43 +0.8
479,660 + Atu5490 0.43 +1.0
479,668 - Atu5490 0.45 +1.5
479,668 - Atu5490 0.45 +0.5
479,668 - Atu5490 0.45 -0.6
479,668 - Atu5490 0.45 -0.8
479,668 - Atu5490 0.45 -2.9
479,702 + Atu5490 0.51 -0.3
479,716 - Atu5490 0.54 -0.9
479,723 - Atu5490 0.55 -0.4
479,775 + Atu5490 0.65 -2.4
479,778 - Atu5490 0.65 -0.6
479,786 + Atu5490 0.67 +0.7
479,808 + Atu5490 0.71 -0.0
479,905 + Atu5490 0.89 +0.9
479,931 + -2.1
480,015 + -0.8
480,066 - +1.2
480,066 - +3.3
480,224 + Atu8052 0.48 -2.9
480,242 + Atu8052 0.61 -1.7
480,310 + +0.1
480,315 + -0.9
480,389 - -0.8
480,428 + -0.5
480,436 - -2.0
480,436 - +3.6
480,448 + +0.2
480,504 + +0.1
480,512 - +1.6
480,598 - Atu5491 0.12 -1.0
480,598 - Atu5491 0.12 +0.2
480,598 - Atu5491 0.12 +1.2
480,605 + Atu5491 0.13 -0.7
480,613 - Atu5491 0.13 -0.7
480,613 - Atu5491 0.13 +0.6
480,618 - Atu5491 0.13 +2.6
480,647 - Atu5491 0.15 -0.5
480,734 - Atu5491 0.19 +0.0
480,759 + Atu5491 0.20 -0.1
480,762 - Atu5491 0.20 +1.1
480,767 - Atu5491 0.20 -0.2
480,784 - Atu5491 0.21 -0.2
481,017 - Atu5491 0.32 -2.3
481,032 + Atu5491 0.32 -0.5
481,086 - Atu5491 0.35 +0.3

Or see this region's nucleotide sequence