Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5500 and Atu5501 are separated by 343 nucleotides Atu5501 and Atu5502 are separated by 114 nucleotides Atu5502 and Atu5503 are separated by 109 nucleotides
Atu5500: Atu5500 - dehydrogenase, at 489,765 to 492,068
Atu5500
Atu5501: Atu5501 - hypothetical protein, at 492,412 to 493,074
Atu5501
Atu5502: Atu5502 - hypothetical protein, at 493,189 to 493,944
Atu5502
Atu5503: Atu5503 - hypothetical protein, at 494,054 to 495,511
Atu5503
Position (kb) 492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 491.412 kb on - strand, within Atu5500 at 491.477 kb on + strand, within Atu5500 at 491.513 kb on - strand, within Atu5500 at 491.621 kb on - strand, within Atu5500 at 491.641 kb on - strand, within Atu5500 at 491.643 kb on + strand, within Atu5500 at 491.658 kb on + strand, within Atu5500 at 491.666 kb on - strand, within Atu5500 at 491.677 kb on + strand, within Atu5500 at 491.699 kb on + strand, within Atu5500 at 491.756 kb on + strand, within Atu5500 at 491.756 kb on + strand, within Atu5500 at 491.764 kb on - strand, within Atu5500 at 491.764 kb on - strand, within Atu5500 at 491.766 kb on + strand, within Atu5500 at 491.785 kb on + strand, within Atu5500 at 491.843 kb on - strand at 491.868 kb on + strand at 491.933 kb on - strand at 491.935 kb on - strand at 491.942 kb on - strand at 492.044 kb on - strand at 492.062 kb on + strand at 492.066 kb on - strand at 492.088 kb on + strand at 492.123 kb on - strand at 492.181 kb on - strand at 492.227 kb on - strand at 492.232 kb on - strand at 492.252 kb on + strand at 492.276 kb on - strand at 492.324 kb on + strand at 492.332 kb on - strand at 492.410 kb on + strand at 492.454 kb on - strand at 492.637 kb on + strand, within Atu5501 at 492.645 kb on - strand, within Atu5501 at 492.664 kb on - strand, within Atu5501 at 492.833 kb on + strand, within Atu5501 at 492.992 kb on + strand, within Atu5501 at 493.042 kb on + strand at 493.089 kb on + strand at 493.089 kb on + strand at 493.218 kb on + strand at 493.417 kb on + strand, within Atu5502 at 493.417 kb on + strand, within Atu5502 at 493.478 kb on - strand, within Atu5502 at 493.483 kb on - strand, within Atu5502 at 493.766 kb on + strand, within Atu5502 at 493.766 kb on + strand, within Atu5502 at 493.768 kb on + strand, within Atu5502 at 493.823 kb on + strand, within Atu5502 at 493.825 kb on + strand, within Atu5502 at 493.833 kb on + strand, within Atu5502 at 494.030 kb on - strand at 494.066 kb on + strand at 494.066 kb on - strand at 494.066 kb on - strand at 494.072 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 491,412 - Atu5500 0.71 -2.0 491,477 + Atu5500 0.74 +0.3 491,513 - Atu5500 0.76 -0.2 491,621 - Atu5500 0.81 -0.6 491,641 - Atu5500 0.81 +0.8 491,643 + Atu5500 0.82 -0.5 491,658 + Atu5500 0.82 +0.8 491,666 - Atu5500 0.83 -0.1 491,677 + Atu5500 0.83 +1.5 491,699 + Atu5500 0.84 -1.1 491,756 + Atu5500 0.86 +0.5 491,756 + Atu5500 0.86 +2.8 491,764 - Atu5500 0.87 -1.0 491,764 - Atu5500 0.87 -2.8 491,766 + Atu5500 0.87 +0.5 491,785 + Atu5500 0.88 -0.1 491,843 - +1.7 491,868 + +0.6 491,933 - +4.8 491,935 - -1.3 491,942 - -0.9 492,044 - +1.0 492,062 + -0.2 492,066 - +0.7 492,088 + +0.3 492,123 - +1.7 492,181 - +0.8 492,227 - +0.5 492,232 - +0.1 492,252 + +0.8 492,276 - +0.6 492,324 + +0.7 492,332 - -0.2 492,410 + -0.7 492,454 - -0.7 492,637 + Atu5501 0.34 -0.3 492,645 - Atu5501 0.35 -1.2 492,664 - Atu5501 0.38 -0.6 492,833 + Atu5501 0.63 -3.7 492,992 + Atu5501 0.87 -0.4 493,042 + -0.1 493,089 + -0.2 493,089 + -0.5 493,218 + +3.7 493,417 + Atu5502 0.30 +1.1 493,417 + Atu5502 0.30 -0.4 493,478 - Atu5502 0.38 +0.3 493,483 - Atu5502 0.39 -2.7 493,766 + Atu5502 0.76 -0.2 493,766 + Atu5502 0.76 +1.1 493,768 + Atu5502 0.77 -1.0 493,823 + Atu5502 0.84 -0.5 493,825 + Atu5502 0.84 -1.2 493,833 + Atu5502 0.85 +0.2 494,030 - +0.4 494,066 + -1.5 494,066 - -0.1 494,066 - +2.5 494,072 - +0.6
Or see this region's nucleotide sequence