Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5167 and Atu5168 are separated by 35 nucleotides Atu5168 and Atu5169 are separated by 3 nucleotides Atu5169 and Atu5170 overlap by 1 nucleotides Atu5170 and Atu5171 are separated by 14 nucleotides
Atu5167: Atu5167 - type IV secretion protein AvhB6, at 165,141 to 166,076
Atu5167
Atu5168: Atu5168 - type IV secretion protein AvhB7, at 166,112 to 166,378
Atu5168
Atu5169: Atu5169 - type IV secretion protein AvhB8, at 166,382 to 167,053
Atu5169
Atu5170: Atu5170 - type IV secretion protein AvhB9, at 167,053 to 167,904
Atu5170
Atu5171: Atu5171 - type IV secretion protein AvhB10, at 167,919 to 169,091
Atu5171
Position (kb) 167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 166.114 kb on + strand at 166.179 kb on - strand, within Atu5168 at 166.438 kb on + strand at 166.446 kb on - strand at 166.455 kb on - strand, within Atu5169 at 166.501 kb on - strand, within Atu5169 at 166.514 kb on + strand, within Atu5169 at 166.554 kb on - strand, within Atu5169 at 166.555 kb on + strand, within Atu5169 at 166.691 kb on + strand, within Atu5169 at 166.704 kb on - strand, within Atu5169 at 166.782 kb on - strand, within Atu5169 at 166.832 kb on + strand, within Atu5169 at 166.983 kb on - strand, within Atu5169 at 167.041 kb on - strand at 167.041 kb on - strand at 167.144 kb on + strand, within Atu5170 at 167.178 kb on - strand, within Atu5170 at 167.371 kb on - strand, within Atu5170 at 167.425 kb on + strand, within Atu5170 at 167.449 kb on + strand, within Atu5170 at 167.472 kb on - strand, within Atu5170 at 167.637 kb on + strand, within Atu5170 at 167.692 kb on - strand, within Atu5170 at 167.784 kb on + strand, within Atu5170 at 167.799 kb on - strand, within Atu5170 at 167.823 kb on - strand at 167.944 kb on + strand at 168.020 kb on - strand at 168.089 kb on + strand, within Atu5171 at 168.276 kb on - strand, within Atu5171 at 168.308 kb on - strand, within Atu5171 at 168.318 kb on - strand, within Atu5171 at 168.318 kb on - strand, within Atu5171 at 168.613 kb on - strand, within Atu5171 at 168.696 kb on - strand, within Atu5171 at 168.741 kb on + strand, within Atu5171 at 168.882 kb on - strand, within Atu5171 at 168.892 kb on - strand, within Atu5171
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 166,114 + +0.3 166,179 - Atu5168 0.25 -1.4 166,438 + -0.2 166,446 - -2.0 166,455 - Atu5169 0.11 -1.1 166,501 - Atu5169 0.18 -3.1 166,514 + Atu5169 0.20 +0.4 166,554 - Atu5169 0.26 +0.1 166,555 + Atu5169 0.26 -1.6 166,691 + Atu5169 0.46 -0.6 166,704 - Atu5169 0.48 +0.1 166,782 - Atu5169 0.60 -0.4 166,832 + Atu5169 0.67 -0.9 166,983 - Atu5169 0.89 +0.3 167,041 - +0.9 167,041 - -0.0 167,144 + Atu5170 0.11 +1.6 167,178 - Atu5170 0.15 +1.5 167,371 - Atu5170 0.37 -0.3 167,425 + Atu5170 0.44 -0.1 167,449 + Atu5170 0.46 -0.8 167,472 - Atu5170 0.49 +0.8 167,637 + Atu5170 0.69 +1.2 167,692 - Atu5170 0.75 -0.2 167,784 + Atu5170 0.86 +0.2 167,799 - Atu5170 0.88 +0.0 167,823 - +0.4 167,944 + +0.4 168,020 - -0.3 168,089 + Atu5171 0.14 +0.7 168,276 - Atu5171 0.30 +1.7 168,308 - Atu5171 0.33 -1.9 168,318 - Atu5171 0.34 -1.1 168,318 - Atu5171 0.34 -1.6 168,613 - Atu5171 0.59 +0.9 168,696 - Atu5171 0.66 +2.9 168,741 + Atu5171 0.70 -1.0 168,882 - Atu5171 0.82 +0.8 168,892 - Atu5171 0.83 +0.5
Or see this region's nucleotide sequence