Strain Fitness in Agrobacterium fabrum C58 around Atu3656

Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3655 and Atu3656 are separated by 180 nucleotidesAtu3656 and Atu3657 are separated by 268 nucleotidesAtu3657 and Atu3658 are separated by 262 nucleotides Atu3655: Atu3655 - antioxidant protein, at 705,579 to 706,145 Atu3655 Atu3656: Atu3656 - acetyltransferase, at 706,326 to 706,712 Atu3656 Atu3657: Atu3657 - hypothetical protein, at 706,981 to 707,229 Atu3657 Atu3658: Atu3658 - MerR family transcriptional regulator, at 707,492 to 708,577 Atu3658 Position (kb) 706 707Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 705.346 kb on + strandat 705.356 kb on + strandat 705.369 kb on - strandat 705.374 kb on - strandat 705.496 kb on + strandat 705.506 kb on + strandat 705.571 kb on - strandat 705.632 kb on + strandat 705.688 kb on - strand, within Atu3655at 705.720 kb on + strand, within Atu3655at 705.728 kb on - strand, within Atu3655at 705.745 kb on - strand, within Atu3655at 705.789 kb on + strand, within Atu3655at 705.812 kb on - strand, within Atu3655at 705.839 kb on + strand, within Atu3655at 705.848 kb on + strand, within Atu3655at 705.850 kb on - strand, within Atu3655at 705.907 kb on + strand, within Atu3655at 705.939 kb on - strand, within Atu3655at 705.970 kb on + strand, within Atu3655at 705.978 kb on - strand, within Atu3655at 705.986 kb on + strand, within Atu3655at 706.066 kb on + strand, within Atu3655at 706.074 kb on - strand, within Atu3655at 706.134 kb on + strandat 706.179 kb on + strandat 706.267 kb on - strandat 706.334 kb on + strandat 706.382 kb on + strand, within Atu3656at 706.389 kb on - strand, within Atu3656at 706.438 kb on + strand, within Atu3656at 706.438 kb on + strand, within Atu3656at 706.438 kb on + strand, within Atu3656at 706.446 kb on - strand, within Atu3656at 706.446 kb on - strand, within Atu3656at 706.459 kb on + strand, within Atu3656at 706.499 kb on + strand, within Atu3656at 706.507 kb on - strand, within Atu3656at 706.507 kb on - strand, within Atu3656at 706.509 kb on + strand, within Atu3656at 706.512 kb on - strand, within Atu3656at 706.524 kb on - strand, within Atu3656at 706.534 kb on + strand, within Atu3656at 706.682 kb on + strandat 706.683 kb on + strandat 706.687 kb on + strandat 706.687 kb on + strandat 706.690 kb on - strandat 706.695 kb on - strandat 706.703 kb on + strandat 706.766 kb on - strandat 706.835 kb on + strandat 706.858 kb on + strandat 706.983 kb on + strandat 707.012 kb on + strand, within Atu3657at 707.012 kb on + strand, within Atu3657at 707.020 kb on - strand, within Atu3657at 707.169 kb on - strand, within Atu3657at 707.169 kb on - strand, within Atu3657at 707.171 kb on + strand, within Atu3657at 707.226 kb on - strandat 707.301 kb on - strandat 707.321 kb on + strandat 707.321 kb on + strandat 707.359 kb on - strandat 707.365 kb on + strandat 707.432 kb on - strandat 707.541 kb on + strandat 707.541 kb on + strandat 707.541 kb on + strandat 707.541 kb on + strandat 707.549 kb on - strandat 707.549 kb on - strandat 707.549 kb on - strandat 707.549 kb on - strandat 707.602 kb on - strand, within Atu3658at 707.641 kb on - strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.691 kb on + strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658at 707.699 kb on - strand, within Atu3658

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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705,346 + -0.2
705,356 + +0.6
705,369 - +0.8
705,374 - -0.8
705,496 + +0.4
705,506 + +1.7
705,571 - +0.1
705,632 + -0.1
705,688 - Atu3655 0.19 +0.2
705,720 + Atu3655 0.25 -0.0
705,728 - Atu3655 0.26 -2.8
705,745 - Atu3655 0.29 -1.6
705,789 + Atu3655 0.37 -0.6
705,812 - Atu3655 0.41 +0.0
705,839 + Atu3655 0.46 +1.0
705,848 + Atu3655 0.47 +0.7
705,850 - Atu3655 0.48 -2.0
705,907 + Atu3655 0.58 -2.2
705,939 - Atu3655 0.63 -0.3
705,970 + Atu3655 0.69 -1.5
705,978 - Atu3655 0.70 +1.0
705,986 + Atu3655 0.72 -0.2
706,066 + Atu3655 0.86 -1.8
706,074 - Atu3655 0.87 -0.8
706,134 + +0.4
706,179 + -0.7
706,267 - -0.7
706,334 + -0.6
706,382 + Atu3656 0.14 +1.1
706,389 - Atu3656 0.16 +0.5
706,438 + Atu3656 0.29 +0.9
706,438 + Atu3656 0.29 +1.4
706,438 + Atu3656 0.29 -0.8
706,446 - Atu3656 0.31 +2.3
706,446 - Atu3656 0.31 -0.8
706,459 + Atu3656 0.34 -0.0
706,499 + Atu3656 0.45 +1.4
706,507 - Atu3656 0.47 -0.9
706,507 - Atu3656 0.47 +2.7
706,509 + Atu3656 0.47 +0.1
706,512 - Atu3656 0.48 +1.0
706,524 - Atu3656 0.51 -1.0
706,534 + Atu3656 0.54 -0.3
706,682 + +0.2
706,683 + -2.2
706,687 + -0.9
706,687 + +0.1
706,690 - +2.4
706,695 - -1.5
706,703 + -1.8
706,766 - -0.6
706,835 + +0.6
706,858 + +0.2
706,983 + -1.0
707,012 + Atu3657 0.12 +0.3
707,012 + Atu3657 0.12 -0.4
707,020 - Atu3657 0.16 -1.2
707,169 - Atu3657 0.76 -1.0
707,169 - Atu3657 0.76 +0.2
707,171 + Atu3657 0.76 -1.7
707,226 - -0.1
707,301 - -0.2
707,321 + +2.3
707,321 + +3.1
707,359 - +0.0
707,365 + -1.9
707,432 - -1.6
707,541 + +0.4
707,541 + +0.4
707,541 + -1.4
707,541 + -1.8
707,549 - +0.4
707,549 - +0.8
707,549 - -2.3
707,549 - -2.5
707,602 - Atu3658 0.10 -0.8
707,641 - Atu3658 0.14 -0.5
707,691 + Atu3658 0.18 +1.6
707,691 + Atu3658 0.18 +0.5
707,691 + Atu3658 0.18 +0.3
707,691 + Atu3658 0.18 +0.9
707,691 + Atu3658 0.18 -0.1
707,691 + Atu3658 0.18 -0.5
707,691 + Atu3658 0.18 -0.4
707,691 + Atu3658 0.18 -1.0
707,691 + Atu3658 0.18 -0.9
707,691 + Atu3658 0.18 +0.2
707,691 + Atu3658 0.18 +0.9
707,691 + Atu3658 0.18 -0.6
707,691 + Atu3658 0.18 +2.4
707,691 + Atu3658 0.18 +1.5
707,691 + Atu3658 0.18 +0.5
707,691 + Atu3658 0.18 +1.2
707,691 + Atu3658 0.18 -0.8
707,691 + Atu3658 0.18 -2.1
707,691 + Atu3658 0.18 +0.2
707,691 + Atu3658 0.18 -0.4
707,691 + Atu3658 0.18 +0.1
707,691 + Atu3658 0.18 +2.2
707,691 + Atu3658 0.18 +2.6
707,691 + Atu3658 0.18 -0.2
707,691 + Atu3658 0.18 +0.0
707,691 + Atu3658 0.18 -1.5
707,691 + Atu3658 0.18 +0.0
707,691 + Atu3658 0.18 -1.5
707,691 + Atu3658 0.18 +0.2
707,691 + Atu3658 0.18 -0.1
707,691 + Atu3658 0.18 -0.6
707,691 + Atu3658 0.18 +0.3
707,691 + Atu3658 0.18 -1.6
707,691 + Atu3658 0.18 +0.1
707,691 + Atu3658 0.18 +2.7
707,699 - Atu3658 0.19 -3.0
707,699 - Atu3658 0.19 +0.0
707,699 - Atu3658 0.19 +1.9
707,699 - Atu3658 0.19 +1.0
707,699 - Atu3658 0.19 +0.1
707,699 - Atu3658 0.19 +0.6
707,699 - Atu3658 0.19 +0.2
707,699 - Atu3658 0.19 +0.7
707,699 - Atu3658 0.19 -1.3
707,699 - Atu3658 0.19 +0.4
707,699 - Atu3658 0.19 +0.0
707,699 - Atu3658 0.19 -0.4
707,699 - Atu3658 0.19 +2.4
707,699 - Atu3658 0.19 -2.0
707,699 - Atu3658 0.19 +0.2
707,699 - Atu3658 0.19 +2.4
707,699 - Atu3658 0.19 +0.5
707,699 - Atu3658 0.19 -0.6
707,699 - Atu3658 0.19 -0.8
707,699 - Atu3658 0.19 -0.4
707,699 - Atu3658 0.19 +0.1
707,699 - Atu3658 0.19 -0.8
707,699 - Atu3658 0.19 +0.3
707,699 - Atu3658 0.19 -0.9
707,699 - Atu3658 0.19 +1.2
707,699 - Atu3658 0.19 +0.2

Or see this region's nucleotide sequence