Strain Fitness in Agrobacterium fabrum C58 around Atu3439

Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3438 and Atu3439 are separated by 67 nucleotidesAtu3439 and Atu3440 are separated by 19 nucleotides Atu3438: Atu3438 - oxidoreductase, at 484,663 to 485,718 Atu3438 Atu3439: Atu3439 - acyl-CoA dehydrogenase, at 485,786 to 487,024 Atu3439 Atu3440: Atu3440 - LysR family transcriptional regulator, at 487,044 to 488,015 Atu3440 Position (kb) 485 486 487 488Strain fitness (log2 ratio) -2 -1 0 1 2 3at 484.793 kb on + strand, within Atu3438at 484.800 kb on - strand, within Atu3438at 484.848 kb on - strand, within Atu3438at 484.868 kb on - strand, within Atu3438at 484.921 kb on + strand, within Atu3438at 484.956 kb on + strand, within Atu3438at 485.125 kb on - strand, within Atu3438at 485.160 kb on + strand, within Atu3438at 485.240 kb on - strand, within Atu3438at 485.276 kb on - strand, within Atu3438at 485.276 kb on - strand, within Atu3438at 485.293 kb on + strand, within Atu3438at 485.301 kb on - strand, within Atu3438at 485.428 kb on + strand, within Atu3438at 485.470 kb on + strand, within Atu3438at 485.633 kb on + strandat 485.640 kb on - strandat 485.676 kb on + strandat 485.701 kb on - strandat 485.708 kb on - strandat 485.734 kb on - strandat 485.771 kb on - strandat 485.771 kb on - strandat 485.892 kb on + strandat 485.892 kb on + strandat 485.926 kb on - strand, within Atu3439at 485.959 kb on + strand, within Atu3439at 486.018 kb on + strand, within Atu3439at 486.026 kb on - strand, within Atu3439at 486.052 kb on + strand, within Atu3439at 486.105 kb on + strand, within Atu3439at 486.157 kb on - strand, within Atu3439at 486.183 kb on - strand, within Atu3439at 486.214 kb on - strand, within Atu3439at 486.231 kb on - strand, within Atu3439at 486.231 kb on - strand, within Atu3439at 486.393 kb on + strand, within Atu3439at 486.509 kb on - strand, within Atu3439at 486.581 kb on + strand, within Atu3439at 486.589 kb on - strand, within Atu3439at 486.589 kb on - strand, within Atu3439at 486.589 kb on - strand, within Atu3439at 486.589 kb on - strand, within Atu3439at 486.595 kb on + strand, within Atu3439at 486.605 kb on + strand, within Atu3439at 486.605 kb on + strand, within Atu3439at 486.605 kb on + strand, within Atu3439at 486.605 kb on + strand, within Atu3439at 486.613 kb on - strand, within Atu3439at 486.613 kb on - strand, within Atu3439at 486.613 kb on - strand, within Atu3439at 486.629 kb on + strand, within Atu3439at 486.811 kb on + strand, within Atu3439at 486.843 kb on + strand, within Atu3439at 486.851 kb on - strand, within Atu3439at 486.926 kb on + strandat 486.934 kb on - strandat 486.934 kb on - strandat 486.954 kb on - strandat 486.995 kb on - strandat 487.048 kb on + strandat 487.130 kb on + strandat 487.310 kb on - strand, within Atu3440at 487.382 kb on + strand, within Atu3440at 487.433 kb on - strand, within Atu3440at 487.440 kb on - strand, within Atu3440at 487.446 kb on + strand, within Atu3440at 487.600 kb on - strand, within Atu3440at 487.600 kb on - strand, within Atu3440at 487.609 kb on - strand, within Atu3440at 487.669 kb on + strand, within Atu3440at 487.712 kb on - strand, within Atu3440at 487.712 kb on - strand, within Atu3440at 487.803 kb on + strand, within Atu3440at 487.856 kb on + strand, within Atu3440at 487.891 kb on + strand, within Atu3440at 487.899 kb on - strand, within Atu3440at 487.899 kb on - strand, within Atu3440at 487.920 kb on + strandat 487.923 kb on - strandat 487.938 kb on - strandat 487.986 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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484,793 + Atu3438 0.12 +0.1
484,800 - Atu3438 0.13 -1.5
484,848 - Atu3438 0.18 -2.3
484,868 - Atu3438 0.19 -0.5
484,921 + Atu3438 0.24 -0.3
484,956 + Atu3438 0.28 -0.2
485,125 - Atu3438 0.44 -0.4
485,160 + Atu3438 0.47 -0.2
485,240 - Atu3438 0.55 -2.3
485,276 - Atu3438 0.58 +0.0
485,276 - Atu3438 0.58 -0.1
485,293 + Atu3438 0.60 +0.2
485,301 - Atu3438 0.60 +1.1
485,428 + Atu3438 0.72 +2.8
485,470 + Atu3438 0.76 +1.6
485,633 + -0.0
485,640 - -2.0
485,676 + -2.5
485,701 - +0.6
485,708 - +1.6
485,734 - +0.9
485,771 - -0.5
485,771 - +0.6
485,892 + -1.0
485,892 + +1.1
485,926 - Atu3439 0.11 -0.2
485,959 + Atu3439 0.14 +0.1
486,018 + Atu3439 0.19 +1.5
486,026 - Atu3439 0.19 -1.0
486,052 + Atu3439 0.21 +1.2
486,105 + Atu3439 0.26 +0.6
486,157 - Atu3439 0.30 +0.3
486,183 - Atu3439 0.32 -0.7
486,214 - Atu3439 0.35 -2.1
486,231 - Atu3439 0.36 -2.6
486,231 - Atu3439 0.36 +0.4
486,393 + Atu3439 0.49 +1.6
486,509 - Atu3439 0.58 -0.6
486,581 + Atu3439 0.64 -1.6
486,589 - Atu3439 0.65 +0.2
486,589 - Atu3439 0.65 -1.0
486,589 - Atu3439 0.65 -1.9
486,589 - Atu3439 0.65 -1.8
486,595 + Atu3439 0.65 -0.7
486,605 + Atu3439 0.66 +3.7
486,605 + Atu3439 0.66 -0.3
486,605 + Atu3439 0.66 +1.4
486,605 + Atu3439 0.66 -1.1
486,613 - Atu3439 0.67 +1.4
486,613 - Atu3439 0.67 -1.4
486,613 - Atu3439 0.67 -0.4
486,629 + Atu3439 0.68 -2.0
486,811 + Atu3439 0.83 +1.0
486,843 + Atu3439 0.85 +0.0
486,851 - Atu3439 0.86 +1.2
486,926 + +0.1
486,934 - +0.3
486,934 - -0.0
486,954 - -0.3
486,995 - +0.5
487,048 + -0.3
487,130 + -0.6
487,310 - Atu3440 0.27 +0.1
487,382 + Atu3440 0.35 -0.4
487,433 - Atu3440 0.40 +1.0
487,440 - Atu3440 0.41 +0.6
487,446 + Atu3440 0.41 -0.0
487,600 - Atu3440 0.57 +1.0
487,600 - Atu3440 0.57 -0.0
487,609 - Atu3440 0.58 +0.0
487,669 + Atu3440 0.64 +0.5
487,712 - Atu3440 0.69 +2.1
487,712 - Atu3440 0.69 +0.2
487,803 + Atu3440 0.78 +0.6
487,856 + Atu3440 0.84 -2.0
487,891 + Atu3440 0.87 -1.8
487,899 - Atu3440 0.88 -2.2
487,899 - Atu3440 0.88 +1.0
487,920 + +2.0
487,923 - -1.8
487,938 - -1.6
487,986 + +0.6

Or see this region's nucleotide sequence