Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3372 and Atu3374 are separated by 517 nucleotides Atu3374 and Atu3375 are separated by 127 nucleotides
Atu3372: Atu3372 - sugar ABC transporter substrate-binding protein, at 413,489 to 414,418
Atu3372
Atu3374: Atu3374 - amidohydrolase, at 414,936 to 416,378
Atu3374
Atu3375: Atu3375 - peptide ABC transporter substrate-binding protein, at 416,506 to 418,083
Atu3375
Position (kb) 414
415
416
417 Strain fitness (log2 ratio) -2
-1
0
1
2 at 413.960 kb on + strand, within Atu3372 at 413.970 kb on + strand, within Atu3372 at 414.096 kb on + strand, within Atu3372 at 414.096 kb on + strand, within Atu3372 at 414.104 kb on - strand, within Atu3372 at 414.165 kb on + strand, within Atu3372 at 414.236 kb on + strand, within Atu3372 at 414.239 kb on - strand, within Atu3372 at 414.241 kb on - strand, within Atu3372 at 414.244 kb on - strand, within Atu3372 at 414.246 kb on + strand, within Atu3372 at 414.261 kb on + strand, within Atu3372 at 414.277 kb on - strand, within Atu3372 at 414.297 kb on + strand, within Atu3372 at 414.320 kb on - strand, within Atu3372 at 414.372 kb on - strand at 414.387 kb on + strand at 414.447 kb on - strand at 414.575 kb on - strand at 414.677 kb on - strand at 414.712 kb on + strand at 414.712 kb on + strand at 414.797 kb on + strand at 414.818 kb on - strand at 414.939 kb on - strand at 414.949 kb on - strand at 414.985 kb on - strand at 415.069 kb on + strand at 415.114 kb on + strand, within Atu3374 at 415.122 kb on - strand, within Atu3374 at 415.122 kb on - strand, within Atu3374 at 415.122 kb on - strand, within Atu3374 at 415.122 kb on - strand, within Atu3374 at 415.122 kb on - strand, within Atu3374 at 415.122 kb on - strand, within Atu3374 at 415.122 kb on - strand, within Atu3374 at 415.228 kb on - strand, within Atu3374 at 415.318 kb on + strand, within Atu3374 at 415.420 kb on + strand, within Atu3374 at 415.421 kb on + strand, within Atu3374 at 415.446 kb on - strand, within Atu3374 at 415.512 kb on - strand, within Atu3374 at 415.559 kb on - strand, within Atu3374 at 415.572 kb on - strand, within Atu3374 at 415.728 kb on - strand, within Atu3374 at 415.738 kb on + strand, within Atu3374 at 415.776 kb on + strand, within Atu3374 at 415.834 kb on + strand, within Atu3374 at 415.846 kb on + strand, within Atu3374 at 415.848 kb on + strand, within Atu3374 at 415.856 kb on - strand, within Atu3374 at 415.856 kb on - strand, within Atu3374 at 415.877 kb on - strand, within Atu3374 at 415.959 kb on - strand, within Atu3374 at 415.974 kb on - strand, within Atu3374 at 415.976 kb on + strand, within Atu3374 at 415.977 kb on - strand, within Atu3374 at 415.984 kb on - strand, within Atu3374 at 415.985 kb on - strand, within Atu3374 at 416.066 kb on + strand, within Atu3374 at 416.108 kb on + strand, within Atu3374 at 416.160 kb on + strand, within Atu3374 at 416.299 kb on - strand at 416.321 kb on + strand at 416.378 kb on + strand at 416.381 kb on - strand at 416.381 kb on - strand at 416.392 kb on - strand at 416.392 kb on - strand at 416.396 kb on - strand at 416.401 kb on - strand at 416.408 kb on - strand at 416.408 kb on - strand at 416.533 kb on - strand at 416.561 kb on + strand at 416.696 kb on + strand, within Atu3375 at 416.704 kb on - strand, within Atu3375 at 416.704 kb on - strand, within Atu3375 at 416.704 kb on - strand, within Atu3375 at 416.715 kb on + strand, within Atu3375 at 416.734 kb on - strand, within Atu3375 at 416.751 kb on - strand, within Atu3375 at 416.776 kb on + strand, within Atu3375 at 416.784 kb on - strand, within Atu3375 at 416.784 kb on - strand, within Atu3375 at 416.809 kb on - strand, within Atu3375 at 416.858 kb on + strand, within Atu3375 at 416.911 kb on - strand, within Atu3375 at 416.911 kb on - strand, within Atu3375 at 416.935 kb on + strand, within Atu3375 at 417.054 kb on + strand, within Atu3375 at 417.062 kb on - strand, within Atu3375 at 417.073 kb on - strand, within Atu3375 at 417.178 kb on + strand, within Atu3375 at 417.335 kb on + strand, within Atu3375
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 413,960 + Atu3372 0.51 +0.8 413,970 + Atu3372 0.52 +1.0 414,096 + Atu3372 0.65 +0.4 414,096 + Atu3372 0.65 -0.3 414,104 - Atu3372 0.66 +0.7 414,165 + Atu3372 0.73 +0.9 414,236 + Atu3372 0.80 +0.2 414,239 - Atu3372 0.81 -0.9 414,241 - Atu3372 0.81 +0.2 414,244 - Atu3372 0.81 +0.8 414,246 + Atu3372 0.81 -0.2 414,261 + Atu3372 0.83 -0.7 414,277 - Atu3372 0.85 -0.2 414,297 + Atu3372 0.87 +0.9 414,320 - Atu3372 0.89 -0.6 414,372 - +0.2 414,387 + +0.1 414,447 - -2.6 414,575 - -0.1 414,677 - +0.9 414,712 + +0.2 414,712 + +0.2 414,797 + -0.4 414,818 - -1.9 414,939 - -0.1 414,949 - +0.8 414,985 - -0.2 415,069 + -0.4 415,114 + Atu3374 0.12 -0.4 415,122 - Atu3374 0.13 +1.9 415,122 - Atu3374 0.13 +0.2 415,122 - Atu3374 0.13 -0.6 415,122 - Atu3374 0.13 -1.0 415,122 - Atu3374 0.13 +0.4 415,122 - Atu3374 0.13 -0.3 415,122 - Atu3374 0.13 +0.1 415,228 - Atu3374 0.20 -1.5 415,318 + Atu3374 0.26 +0.1 415,420 + Atu3374 0.34 +0.2 415,421 + Atu3374 0.34 -0.8 415,446 - Atu3374 0.35 +0.0 415,512 - Atu3374 0.40 +0.0 415,559 - Atu3374 0.43 -1.8 415,572 - Atu3374 0.44 -0.2 415,728 - Atu3374 0.55 -0.9 415,738 + Atu3374 0.56 +0.2 415,776 + Atu3374 0.58 -1.4 415,834 + Atu3374 0.62 -0.8 415,846 + Atu3374 0.63 -0.4 415,848 + Atu3374 0.63 -0.5 415,856 - Atu3374 0.64 +0.2 415,856 - Atu3374 0.64 -0.4 415,877 - Atu3374 0.65 -1.6 415,959 - Atu3374 0.71 -0.3 415,974 - Atu3374 0.72 +1.2 415,976 + Atu3374 0.72 -0.7 415,977 - Atu3374 0.72 -0.8 415,984 - Atu3374 0.73 +1.3 415,985 - Atu3374 0.73 +1.0 416,066 + Atu3374 0.78 -0.4 416,108 + Atu3374 0.81 -1.0 416,160 + Atu3374 0.85 +0.6 416,299 - -1.2 416,321 + +1.3 416,378 + -2.1 416,381 - +0.0 416,381 - +0.6 416,392 - -0.5 416,392 - +1.1 416,396 - -1.1 416,401 - -0.2 416,408 - +1.0 416,408 - +1.5 416,533 - +0.7 416,561 + -0.2 416,696 + Atu3375 0.12 +0.9 416,704 - Atu3375 0.13 +1.4 416,704 - Atu3375 0.13 -0.8 416,704 - Atu3375 0.13 +0.8 416,715 + Atu3375 0.13 +2.0 416,734 - Atu3375 0.14 +1.4 416,751 - Atu3375 0.16 -2.5 416,776 + Atu3375 0.17 -1.3 416,784 - Atu3375 0.18 -0.2 416,784 - Atu3375 0.18 -0.1 416,809 - Atu3375 0.19 +0.5 416,858 + Atu3375 0.22 +0.2 416,911 - Atu3375 0.26 -0.1 416,911 - Atu3375 0.26 +1.2 416,935 + Atu3375 0.27 +0.3 417,054 + Atu3375 0.35 +2.6 417,062 - Atu3375 0.35 -0.6 417,073 - Atu3375 0.36 +0.2 417,178 + Atu3375 0.43 -0.7 417,335 + Atu3375 0.53 +0.1
Or see this region's nucleotide sequence