Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3365 and Atu8094 are separated by 42 nucleotides Atu8094 and Atu3366 are separated by 394 nucleotides Atu3366 and Atu3367 are separated by 32 nucleotides
Atu3365: Atu3365 - hypothetical protein, at 404,740 to 405,300
Atu3365
Atu8094: Atu8094 - hypothetical protein, at 405,343 to 405,588
Atu8094
Atu3366: Atu3366 - tripartite ATP-independent periplasmic transporter DctQ, at 405,983 to 406,522
Atu3366
Atu3367: Atu3367 - TRAP dicarboxylate transporter subunit DctM, at 406,555 to 408,024
Atu3367
Position (kb) 405
406
407 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 405.060 kb on + strand, within Atu3365 at 405.128 kb on - strand, within Atu3365 at 405.155 kb on + strand, within Atu3365 at 405.163 kb on - strand, within Atu3365 at 405.163 kb on - strand, within Atu3365 at 405.254 kb on + strand at 405.276 kb on - strand at 405.344 kb on - strand at 405.454 kb on + strand, within Atu8094 at 405.464 kb on + strand, within Atu8094 at 405.523 kb on - strand, within Atu8094 at 405.523 kb on - strand, within Atu8094 at 405.541 kb on + strand, within Atu8094 at 405.652 kb on - strand at 405.655 kb on + strand at 405.696 kb on - strand at 405.701 kb on + strand at 405.730 kb on - strand at 405.747 kb on + strand at 405.894 kb on + strand at 405.902 kb on - strand at 405.981 kb on - strand at 406.036 kb on + strand at 406.063 kb on + strand, within Atu3366 at 406.071 kb on - strand, within Atu3366 at 406.257 kb on + strand, within Atu3366 at 406.318 kb on + strand, within Atu3366 at 406.318 kb on + strand, within Atu3366 at 406.318 kb on + strand, within Atu3366 at 406.326 kb on - strand, within Atu3366 at 406.326 kb on - strand, within Atu3366 at 406.326 kb on - strand, within Atu3366 at 406.339 kb on + strand, within Atu3366 at 406.339 kb on + strand, within Atu3366 at 406.341 kb on + strand, within Atu3366 at 406.347 kb on - strand, within Atu3366 at 406.453 kb on + strand, within Atu3366 at 406.519 kb on - strand at 406.792 kb on - strand, within Atu3367 at 406.989 kb on + strand, within Atu3367 at 407.045 kb on + strand, within Atu3367 at 407.053 kb on - strand, within Atu3367 at 407.125 kb on - strand, within Atu3367 at 407.289 kb on + strand, within Atu3367 at 407.373 kb on + strand, within Atu3367 at 407.409 kb on + strand, within Atu3367
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 405,060 + Atu3365 0.57 -1.4 405,128 - Atu3365 0.69 -0.3 405,155 + Atu3365 0.74 -0.2 405,163 - Atu3365 0.75 +1.2 405,163 - Atu3365 0.75 -1.4 405,254 + +0.8 405,276 - +0.3 405,344 - +0.1 405,454 + Atu8094 0.45 -0.4 405,464 + Atu8094 0.49 -0.2 405,523 - Atu8094 0.73 -0.1 405,523 - Atu8094 0.73 -0.2 405,541 + Atu8094 0.80 -1.2 405,652 - +1.0 405,655 + +1.5 405,696 - +1.0 405,701 + +1.5 405,730 - -0.4 405,747 + -0.8 405,894 + -1.4 405,902 - -0.5 405,981 - +0.5 406,036 + +0.3 406,063 + Atu3366 0.15 +1.3 406,071 - Atu3366 0.16 -0.2 406,257 + Atu3366 0.51 -0.6 406,318 + Atu3366 0.62 +0.9 406,318 + Atu3366 0.62 +1.2 406,318 + Atu3366 0.62 -2.1 406,326 - Atu3366 0.64 -0.4 406,326 - Atu3366 0.64 -0.9 406,326 - Atu3366 0.64 +3.0 406,339 + Atu3366 0.66 +0.9 406,339 + Atu3366 0.66 -1.3 406,341 + Atu3366 0.66 -0.9 406,347 - Atu3366 0.67 -0.4 406,453 + Atu3366 0.87 -2.4 406,519 - +0.3 406,792 - Atu3367 0.16 +0.8 406,989 + Atu3367 0.30 +0.5 407,045 + Atu3367 0.33 +0.4 407,053 - Atu3367 0.34 -0.8 407,125 - Atu3367 0.39 -0.1 407,289 + Atu3367 0.50 +0.3 407,373 + Atu3367 0.56 -1.1 407,409 + Atu3367 0.58 -1.0
Or see this region's nucleotide sequence