Strain Fitness in Agrobacterium fabrum C58 around Atu2694

Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2693 and Atu2694 are separated by 32 nucleotidesAtu2694 and Atu2695 overlap by 4 nucleotides Atu2693: Atu2693 - cell division particle, at 2,676,873 to 2,678,309 Atu2693 Atu2694: Atu2694 - hypothetical protein, at 2,678,342 to 2,679,616 Atu2694 Atu2695: Atu2695 - diaminopimelate epimerase, at 2,679,613 to 2,680,512 Atu2695 Position (kb) 2678 2679 2680Strain fitness (log2 ratio) -1 0 1at 2678.433 kb on - strandat 2678.508 kb on - strand, within Atu2694at 2678.562 kb on - strand, within Atu2694at 2679.032 kb on - strand, within Atu2694at 2680.531 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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2,678,433 - -0.1
2,678,508 - Atu2694 0.13 -1.2
2,678,562 - Atu2694 0.17 -1.0
2,679,032 - Atu2694 0.54 +1.3
2,680,531 - +0.3

Or see this region's nucleotide sequence