Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0872 and Atu0873 are separated by 226 nucleotides Atu0873 and Atu0874 are separated by 96 nucleotides Atu0874 and Atu0875 are separated by 5 nucleotides
Atu0872: Atu0872 - methyl-accepting chemotaxis protein, at 868,168 to 870,525
Atu0872
Atu0873: Atu0873 - transcriptional regulator, LysR family, at 870,752 to 871,639
Atu0873
Atu0874: Atu0874 - acetyltransferase, at 871,736 to 872,278
Atu0874
Atu0875: Atu0875 - hypothetical protein, at 872,284 to 872,763
Atu0875
Position (kb) 870
871
872 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 869.762 kb on + strand, within Atu0872 at 869.776 kb on + strand, within Atu0872 at 869.782 kb on + strand, within Atu0872 at 869.816 kb on - strand, within Atu0872 at 869.816 kb on - strand, within Atu0872 at 869.841 kb on - strand, within Atu0872 at 870.090 kb on + strand, within Atu0872 at 870.175 kb on - strand, within Atu0872 at 870.222 kb on + strand, within Atu0872 at 870.233 kb on + strand, within Atu0872 at 870.254 kb on - strand, within Atu0872 at 870.338 kb on + strand at 870.348 kb on + strand at 870.348 kb on + strand at 870.356 kb on - strand at 870.391 kb on + strand at 870.422 kb on - strand at 870.440 kb on + strand at 870.519 kb on + strand at 870.527 kb on - strand at 870.527 kb on - strand at 870.527 kb on - strand at 870.587 kb on - strand at 870.603 kb on + strand at 870.603 kb on + strand at 870.603 kb on + strand at 870.658 kb on - strand at 870.666 kb on - strand at 870.666 kb on - strand at 870.666 kb on - strand at 870.722 kb on - strand at 870.749 kb on + strand at 870.766 kb on - strand at 870.785 kb on - strand at 870.804 kb on + strand at 870.812 kb on - strand at 870.822 kb on - strand at 870.937 kb on - strand, within Atu0873 at 870.966 kb on + strand, within Atu0873 at 870.968 kb on - strand, within Atu0873 at 870.969 kb on - strand, within Atu0873 at 870.971 kb on + strand, within Atu0873 at 870.979 kb on - strand, within Atu0873 at 871.008 kb on + strand, within Atu0873 at 871.093 kb on + strand, within Atu0873 at 871.098 kb on + strand, within Atu0873 at 871.103 kb on + strand, within Atu0873 at 871.106 kb on - strand, within Atu0873 at 871.212 kb on + strand, within Atu0873 at 871.368 kb on + strand, within Atu0873 at 871.381 kb on + strand, within Atu0873 at 871.519 kb on + strand, within Atu0873 at 871.521 kb on + strand, within Atu0873 at 871.546 kb on + strand, within Atu0873 at 871.709 kb on + strand at 871.726 kb on + strand at 871.905 kb on - strand, within Atu0874 at 872.042 kb on + strand, within Atu0874 at 872.075 kb on + strand, within Atu0874 at 872.174 kb on - strand, within Atu0874 at 872.199 kb on + strand, within Atu0874 at 872.244 kb on + strand at 872.255 kb on + strand at 872.349 kb on - strand, within Atu0875 at 872.354 kb on + strand, within Atu0875 at 872.491 kb on - strand, within Atu0875 at 872.499 kb on + strand, within Atu0875 at 872.499 kb on + strand, within Atu0875 at 872.499 kb on + strand, within Atu0875 at 872.520 kb on - strand, within Atu0875 at 872.606 kb on - strand, within Atu0875 at 872.606 kb on - strand, within Atu0875 at 872.631 kb on - strand, within Atu0875
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 869,762 + Atu0872 0.68 +0.5 869,776 + Atu0872 0.68 +1.2 869,782 + Atu0872 0.68 +2.0 869,816 - Atu0872 0.70 +0.4 869,816 - Atu0872 0.70 -0.0 869,841 - Atu0872 0.71 -0.2 870,090 + Atu0872 0.82 -0.0 870,175 - Atu0872 0.85 -0.3 870,222 + Atu0872 0.87 -3.2 870,233 + Atu0872 0.88 +0.1 870,254 - Atu0872 0.88 -2.1 870,338 + +0.5 870,348 + +0.5 870,348 + -0.3 870,356 - +0.8 870,391 + -0.5 870,422 - +1.3 870,440 + -0.6 870,519 + +1.9 870,527 - +0.2 870,527 - +0.7 870,527 - +1.9 870,587 - +0.7 870,603 + +1.0 870,603 + -1.0 870,603 + -0.1 870,658 - -2.8 870,666 - -0.2 870,666 - +2.6 870,666 - -0.1 870,722 - -0.7 870,749 + -0.8 870,766 - +1.3 870,785 - -2.6 870,804 + -2.7 870,812 - -0.4 870,822 - -0.0 870,937 - Atu0873 0.21 -0.6 870,966 + Atu0873 0.24 +1.2 870,968 - Atu0873 0.24 +0.7 870,969 - Atu0873 0.24 +0.4 870,971 + Atu0873 0.25 -0.5 870,979 - Atu0873 0.26 +0.2 871,008 + Atu0873 0.29 -0.1 871,093 + Atu0873 0.38 +0.2 871,098 + Atu0873 0.39 -0.0 871,103 + Atu0873 0.40 -1.3 871,106 - Atu0873 0.40 +1.2 871,212 + Atu0873 0.52 -2.2 871,368 + Atu0873 0.69 -0.8 871,381 + Atu0873 0.71 +2.7 871,519 + Atu0873 0.86 -0.5 871,521 + Atu0873 0.87 -1.3 871,546 + Atu0873 0.89 +1.0 871,709 + -1.0 871,726 + -1.1 871,905 - Atu0874 0.31 -0.4 872,042 + Atu0874 0.56 -1.2 872,075 + Atu0874 0.62 -1.1 872,174 - Atu0874 0.81 +0.9 872,199 + Atu0874 0.85 +6.1 872,244 + +0.8 872,255 + -1.6 872,349 - Atu0875 0.14 -2.6 872,354 + Atu0875 0.15 -0.8 872,491 - Atu0875 0.43 +1.3 872,499 + Atu0875 0.45 +1.8 872,499 + Atu0875 0.45 -0.2 872,499 + Atu0875 0.45 +3.3 872,520 - Atu0875 0.49 +1.3 872,606 - Atu0875 0.67 -0.8 872,606 - Atu0875 0.67 -0.1 872,631 - Atu0875 0.72 +5.3
Or see this region's nucleotide sequence