Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5539 and Atu5540 overlap by 4 nucleotides Atu5540 and Atu5541 overlap by 4 nucleotides Atu5541 and Atu5542 are separated by 62 nucleotides Atu5542 and Atu5543 are separated by 224 nucleotides
Atu5539: Atu5539 - HlyD family secretion protein, at 534,191 to 535,066
Atu5539
Atu5540: Atu5540 - hypothetical protein, at 535,063 to 535,272
Atu5540
Atu5541: Atu5541 - hypothetical protein, at 535,269 to 537,218
Atu5541
Atu5542: Atu5542 - hypothetical protein, at 537,281 to 537,658
Atu5542
Atu5543: Atu5543 - AraC family transcriptional regulator, at 537,883 to 538,530
Atu5543
Position (kb) 535
536
537
538 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 534.303 kb on - strand, within Atu5539 at 534.308 kb on - strand, within Atu5539 at 534.339 kb on + strand, within Atu5539 at 534.422 kb on - strand, within Atu5539 at 534.422 kb on - strand, within Atu5539 at 534.426 kb on + strand, within Atu5539 at 534.477 kb on - strand, within Atu5539 at 534.551 kb on + strand, within Atu5539 at 534.597 kb on + strand, within Atu5539 at 534.615 kb on + strand, within Atu5539 at 534.617 kb on - strand, within Atu5539 at 534.640 kb on + strand, within Atu5539 at 534.715 kb on + strand, within Atu5539 at 534.715 kb on - strand, within Atu5539 at 534.771 kb on + strand, within Atu5539 at 534.773 kb on - strand, within Atu5539 at 534.940 kb on + strand, within Atu5539 at 534.940 kb on + strand, within Atu5539 at 534.959 kb on + strand, within Atu5539 at 534.992 kb on + strand at 535.008 kb on - strand at 535.109 kb on + strand, within Atu5540 at 535.253 kb on + strand at 535.271 kb on + strand at 535.305 kb on - strand at 535.351 kb on - strand at 535.351 kb on - strand at 535.376 kb on + strand at 535.408 kb on - strand at 535.444 kb on - strand at 535.506 kb on + strand, within Atu5541 at 535.506 kb on + strand, within Atu5541 at 535.506 kb on + strand, within Atu5541 at 535.514 kb on - strand, within Atu5541 at 535.514 kb on - strand, within Atu5541 at 535.514 kb on - strand, within Atu5541 at 535.514 kb on - strand, within Atu5541 at 535.516 kb on - strand, within Atu5541 at 535.518 kb on + strand, within Atu5541 at 535.536 kb on - strand, within Atu5541 at 535.565 kb on - strand, within Atu5541 at 535.565 kb on - strand, within Atu5541 at 535.595 kb on - strand, within Atu5541 at 535.619 kb on + strand, within Atu5541 at 535.620 kb on - strand, within Atu5541 at 535.669 kb on + strand, within Atu5541 at 535.776 kb on - strand, within Atu5541 at 535.776 kb on - strand, within Atu5541 at 535.776 kb on - strand, within Atu5541 at 535.795 kb on + strand, within Atu5541 at 535.795 kb on + strand, within Atu5541 at 535.803 kb on - strand, within Atu5541 at 535.803 kb on - strand, within Atu5541 at 535.803 kb on - strand, within Atu5541 at 535.946 kb on - strand, within Atu5541 at 535.946 kb on - strand, within Atu5541 at 535.962 kb on - strand, within Atu5541 at 535.964 kb on + strand, within Atu5541 at 535.970 kb on + strand, within Atu5541 at 536.130 kb on - strand, within Atu5541 at 536.138 kb on + strand, within Atu5541 at 536.194 kb on - strand, within Atu5541 at 536.212 kb on + strand, within Atu5541 at 536.256 kb on + strand, within Atu5541 at 536.271 kb on + strand, within Atu5541 at 536.283 kb on - strand, within Atu5541 at 536.301 kb on - strand, within Atu5541 at 536.302 kb on + strand, within Atu5541 at 536.314 kb on + strand, within Atu5541 at 536.327 kb on - strand, within Atu5541 at 536.388 kb on + strand, within Atu5541 at 536.439 kb on - strand, within Atu5541 at 536.514 kb on - strand, within Atu5541 at 536.514 kb on - strand, within Atu5541 at 536.577 kb on + strand, within Atu5541 at 536.582 kb on + strand, within Atu5541 at 536.731 kb on - strand, within Atu5541 at 536.788 kb on + strand, within Atu5541 at 536.817 kb on + strand, within Atu5541 at 536.840 kb on + strand, within Atu5541 at 536.865 kb on + strand, within Atu5541 at 536.865 kb on + strand, within Atu5541 at 536.878 kb on - strand, within Atu5541 at 536.948 kb on + strand, within Atu5541 at 536.948 kb on + strand, within Atu5541 at 536.980 kb on - strand, within Atu5541 at 536.989 kb on - strand, within Atu5541 at 537.076 kb on - strand at 537.161 kb on + strand at 537.161 kb on + strand at 537.188 kb on - strand at 537.280 kb on + strand at 537.298 kb on + strand at 537.306 kb on - strand at 537.308 kb on + strand at 537.308 kb on + strand at 537.316 kb on - strand at 537.316 kb on - strand at 537.318 kb on + strand at 537.318 kb on + strand at 537.320 kb on + strand, within Atu5542 at 537.320 kb on + strand, within Atu5542 at 537.325 kb on + strand, within Atu5542 at 537.328 kb on - strand, within Atu5542 at 537.353 kb on + strand, within Atu5542 at 537.353 kb on + strand, within Atu5542 at 537.361 kb on - strand, within Atu5542 at 537.378 kb on + strand, within Atu5542 at 537.396 kb on + strand, within Atu5542 at 537.401 kb on + strand, within Atu5542 at 537.401 kb on + strand, within Atu5542 at 537.454 kb on + strand, within Atu5542 at 537.464 kb on + strand, within Atu5542 at 537.468 kb on - strand, within Atu5542 at 537.472 kb on - strand, within Atu5542 at 537.474 kb on + strand, within Atu5542 at 537.532 kb on - strand, within Atu5542 at 537.579 kb on - strand, within Atu5542 at 537.607 kb on + strand, within Atu5542 at 537.623 kb on + strand at 537.638 kb on + strand at 537.802 kb on + strand at 537.802 kb on + strand at 537.826 kb on - strand at 537.856 kb on + strand at 537.871 kb on + strand at 537.879 kb on + strand at 537.896 kb on - strand at 537.913 kb on + strand at 537.973 kb on + strand, within Atu5543 at 538.042 kb on - strand, within Atu5543 at 538.044 kb on + strand, within Atu5543 at 538.071 kb on + strand, within Atu5543 at 538.146 kb on - strand, within Atu5543 at 538.151 kb on - strand, within Atu5543 at 538.173 kb on - strand, within Atu5543 at 538.198 kb on - strand, within Atu5543
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 534,303 - Atu5539 0.13 -0.4 534,308 - Atu5539 0.13 -0.2 534,339 + Atu5539 0.17 -0.5 534,422 - Atu5539 0.26 -0.8 534,422 - Atu5539 0.26 -1.8 534,426 + Atu5539 0.27 +1.2 534,477 - Atu5539 0.33 +1.6 534,551 + Atu5539 0.41 +0.5 534,597 + Atu5539 0.46 -0.6 534,615 + Atu5539 0.48 +0.4 534,617 - Atu5539 0.49 -0.8 534,640 + Atu5539 0.51 +3.0 534,715 + Atu5539 0.60 -1.3 534,715 - Atu5539 0.60 -1.1 534,771 + Atu5539 0.66 -1.1 534,773 - Atu5539 0.66 +0.1 534,940 + Atu5539 0.86 -1.8 534,940 + Atu5539 0.86 +3.4 534,959 + Atu5539 0.88 -1.9 534,992 + -0.2 535,008 - -0.3 535,109 + Atu5540 0.22 -0.9 535,253 + -0.5 535,271 + -0.1 535,305 - +1.9 535,351 - -0.8 535,351 - -2.2 535,376 + +0.1 535,408 - +1.3 535,444 - +0.1 535,506 + Atu5541 0.12 -1.3 535,506 + Atu5541 0.12 +0.2 535,506 + Atu5541 0.12 -0.4 535,514 - Atu5541 0.13 -0.5 535,514 - Atu5541 0.13 +0.5 535,514 - Atu5541 0.13 +1.4 535,514 - Atu5541 0.13 -1.9 535,516 - Atu5541 0.13 +0.0 535,518 + Atu5541 0.13 -0.4 535,536 - Atu5541 0.14 +0.4 535,565 - Atu5541 0.15 -0.4 535,565 - Atu5541 0.15 +0.4 535,595 - Atu5541 0.17 -2.5 535,619 + Atu5541 0.18 -1.5 535,620 - Atu5541 0.18 -1.8 535,669 + Atu5541 0.21 -2.5 535,776 - Atu5541 0.26 -1.7 535,776 - Atu5541 0.26 -1.2 535,776 - Atu5541 0.26 +0.8 535,795 + Atu5541 0.27 +0.4 535,795 + Atu5541 0.27 +1.1 535,803 - Atu5541 0.27 +2.2 535,803 - Atu5541 0.27 +1.4 535,803 - Atu5541 0.27 -0.9 535,946 - Atu5541 0.35 +0.9 535,946 - Atu5541 0.35 +0.6 535,962 - Atu5541 0.36 +2.3 535,964 + Atu5541 0.36 -2.5 535,970 + Atu5541 0.36 +1.7 536,130 - Atu5541 0.44 +1.0 536,138 + Atu5541 0.45 +0.7 536,194 - Atu5541 0.47 -0.2 536,212 + Atu5541 0.48 -1.3 536,256 + Atu5541 0.51 -0.2 536,271 + Atu5541 0.51 -1.4 536,283 - Atu5541 0.52 +0.2 536,301 - Atu5541 0.53 +2.1 536,302 + Atu5541 0.53 +6.4 536,314 + Atu5541 0.54 -2.6 536,327 - Atu5541 0.54 +0.3 536,388 + Atu5541 0.57 +1.5 536,439 - Atu5541 0.60 -2.3 536,514 - Atu5541 0.64 +0.3 536,514 - Atu5541 0.64 +0.4 536,577 + Atu5541 0.67 -0.4 536,582 + Atu5541 0.67 -0.1 536,731 - Atu5541 0.75 +0.1 536,788 + Atu5541 0.78 -1.1 536,817 + Atu5541 0.79 +1.1 536,840 + Atu5541 0.81 +2.0 536,865 + Atu5541 0.82 +0.3 536,865 + Atu5541 0.82 -0.2 536,878 - Atu5541 0.83 -0.7 536,948 + Atu5541 0.86 +2.1 536,948 + Atu5541 0.86 +0.3 536,980 - Atu5541 0.88 -0.7 536,989 - Atu5541 0.88 -0.4 537,076 - -0.2 537,161 + -0.1 537,161 + -0.0 537,188 - -0.7 537,280 + -0.4 537,298 + -1.0 537,306 - -0.8 537,308 + +1.3 537,308 + +0.1 537,316 - +0.5 537,316 - -0.8 537,318 + -1.4 537,318 + -1.4 537,320 + Atu5542 0.10 -0.5 537,320 + Atu5542 0.10 +0.8 537,325 + Atu5542 0.12 +1.0 537,328 - Atu5542 0.12 +0.8 537,353 + Atu5542 0.19 -1.7 537,353 + Atu5542 0.19 +0.6 537,361 - Atu5542 0.21 -0.9 537,378 + Atu5542 0.26 -0.7 537,396 + Atu5542 0.30 -0.3 537,401 + Atu5542 0.32 -1.2 537,401 + Atu5542 0.32 +0.4 537,454 + Atu5542 0.46 -0.6 537,464 + Atu5542 0.48 +1.2 537,468 - Atu5542 0.49 +2.8 537,472 - Atu5542 0.51 +0.7 537,474 + Atu5542 0.51 -0.0 537,532 - Atu5542 0.66 +0.8 537,579 - Atu5542 0.79 +2.8 537,607 + Atu5542 0.86 +0.8 537,623 + -0.5 537,638 + -0.5 537,802 + +0.9 537,802 + -1.1 537,826 - -1.1 537,856 + +0.2 537,871 + -0.3 537,879 + +1.1 537,896 - +0.0 537,913 + -0.4 537,973 + Atu5543 0.14 +0.1 538,042 - Atu5543 0.25 -2.0 538,044 + Atu5543 0.25 -0.6 538,071 + Atu5543 0.29 +0.5 538,146 - Atu5543 0.41 -0.3 538,151 - Atu5543 0.41 +0.3 538,173 - Atu5543 0.45 -0.8 538,198 - Atu5543 0.49 +0.7
Or see this region's nucleotide sequence