Strain Fitness in Agrobacterium fabrum C58 around Atu5197

Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5195 and Atu5196 are separated by 124 nucleotidesAtu5196 and Atu5197 are separated by 60 nucleotidesAtu5197 and Atu5198 are separated by 30 nucleotides Atu5195: Atu5195 - LysR family transcriptional regulator, at 191,259 to 192,176 Atu5195 Atu5196: Atu5196 - hypothetical protein, at 192,301 to 193,017 Atu5196 Atu5197: Atu5197 - LysR family transcriptional regulator, at 193,078 to 194,055 Atu5197 Atu5198: Atu5198 - putative oxidoreductase, at 194,086 to 195,102 Atu5198 Position (kb) 193 194 195Strain fitness (log2 ratio) -2 -1 0 1 2 3at 192.145 kb on + strandat 192.160 kb on + strandat 192.168 kb on - strandat 192.168 kb on - strandat 192.170 kb on + strandat 192.268 kb on + strandat 192.361 kb on - strandat 192.372 kb on + strandat 192.389 kb on - strand, within Atu5196at 192.389 kb on - strand, within Atu5196at 192.389 kb on - strand, within Atu5196at 192.389 kb on - strand, within Atu5196at 192.401 kb on + strand, within Atu5196at 192.410 kb on + strand, within Atu5196at 192.410 kb on + strand, within Atu5196at 192.414 kb on - strand, within Atu5196at 192.417 kb on + strand, within Atu5196at 192.544 kb on - strand, within Atu5196at 192.692 kb on + strand, within Atu5196at 192.692 kb on + strand, within Atu5196at 192.955 kb on - strandat 193.046 kb on - strandat 193.087 kb on - strandat 193.121 kb on - strandat 193.168 kb on + strandat 193.168 kb on + strandat 193.199 kb on + strand, within Atu5197at 193.199 kb on + strand, within Atu5197at 193.207 kb on - strand, within Atu5197at 193.224 kb on + strand, within Atu5197at 193.224 kb on + strand, within Atu5197at 193.232 kb on - strand, within Atu5197at 193.232 kb on - strand, within Atu5197at 193.251 kb on + strand, within Atu5197at 193.251 kb on - strand, within Atu5197at 193.278 kb on - strand, within Atu5197at 193.410 kb on + strand, within Atu5197at 193.418 kb on - strand, within Atu5197at 193.419 kb on - strand, within Atu5197at 193.419 kb on - strand, within Atu5197at 193.544 kb on + strand, within Atu5197at 193.641 kb on - strand, within Atu5197at 193.806 kb on + strand, within Atu5197at 193.838 kb on - strand, within Atu5197at 193.853 kb on - strand, within Atu5197at 193.917 kb on - strand, within Atu5197at 193.944 kb on - strand, within Atu5197at 193.949 kb on - strand, within Atu5197at 193.949 kb on - strand, within Atu5197at 194.021 kb on - strandat 194.131 kb on - strandat 194.144 kb on + strandat 194.152 kb on - strandat 194.174 kb on + strandat 194.306 kb on - strand, within Atu5198at 194.306 kb on - strand, within Atu5198at 194.324 kb on + strand, within Atu5198at 194.332 kb on - strand, within Atu5198at 194.418 kb on - strand, within Atu5198at 194.418 kb on - strand, within Atu5198at 194.454 kb on - strand, within Atu5198at 194.456 kb on + strand, within Atu5198at 194.464 kb on - strand, within Atu5198at 194.464 kb on - strand, within Atu5198at 194.469 kb on + strand, within Atu5198at 194.477 kb on - strand, within Atu5198at 194.477 kb on - strand, within Atu5198at 194.509 kb on + strand, within Atu5198at 194.559 kb on - strand, within Atu5198at 194.612 kb on + strand, within Atu5198at 194.620 kb on - strand, within Atu5198at 194.650 kb on + strand, within Atu5198at 194.671 kb on + strand, within Atu5198at 194.718 kb on + strand, within Atu5198at 194.722 kb on - strand, within Atu5198at 194.726 kb on - strand, within Atu5198at 194.734 kb on + strand, within Atu5198at 194.734 kb on + strand, within Atu5198at 194.741 kb on - strand, within Atu5198at 194.741 kb on - strand, within Atu5198at 194.741 kb on - strand, within Atu5198at 194.742 kb on - strand, within Atu5198at 194.742 kb on - strand, within Atu5198at 194.802 kb on + strand, within Atu5198at 194.850 kb on - strand, within Atu5198at 194.873 kb on - strand, within Atu5198at 194.915 kb on + strand, within Atu5198at 194.940 kb on + strand, within Atu5198at 194.940 kb on + strand, within Atu5198at 194.940 kb on + strand, within Atu5198at 194.940 kb on + strand, within Atu5198at 194.940 kb on + strand, within Atu5198at 194.948 kb on - strand, within Atu5198at 194.948 kb on - strand, within Atu5198at 194.948 kb on - strand, within Atu5198at 194.948 kb on - strand, within Atu5198at 194.948 kb on - strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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192,145 + -1.6
192,160 + -1.1
192,168 - -0.6
192,168 - +0.6
192,170 + -0.3
192,268 + -1.7
192,361 - -1.8
192,372 + -1.6
192,389 - Atu5196 0.12 -0.2
192,389 - Atu5196 0.12 -0.9
192,389 - Atu5196 0.12 -0.2
192,389 - Atu5196 0.12 -0.7
192,401 + Atu5196 0.14 -1.6
192,410 + Atu5196 0.15 +0.2
192,410 + Atu5196 0.15 +0.1
192,414 - Atu5196 0.16 +0.4
192,417 + Atu5196 0.16 -0.3
192,544 - Atu5196 0.34 +0.5
192,692 + Atu5196 0.55 +0.1
192,692 + Atu5196 0.55 +0.0
192,955 - -2.0
193,046 - +0.8
193,087 - -0.4
193,121 - -1.8
193,168 + -0.0
193,168 + -0.5
193,199 + Atu5197 0.12 -1.2
193,199 + Atu5197 0.12 +1.7
193,207 - Atu5197 0.13 -0.7
193,224 + Atu5197 0.15 -2.4
193,224 + Atu5197 0.15 +0.3
193,232 - Atu5197 0.16 -0.5
193,232 - Atu5197 0.16 +0.4
193,251 + Atu5197 0.18 +0.3
193,251 - Atu5197 0.18 +0.0
193,278 - Atu5197 0.20 +0.5
193,410 + Atu5197 0.34 -1.4
193,418 - Atu5197 0.35 +0.5
193,419 - Atu5197 0.35 +1.3
193,419 - Atu5197 0.35 -2.3
193,544 + Atu5197 0.48 +1.0
193,641 - Atu5197 0.58 +0.2
193,806 + Atu5197 0.74 -0.3
193,838 - Atu5197 0.78 -1.5
193,853 - Atu5197 0.79 -1.2
193,917 - Atu5197 0.86 -1.5
193,944 - Atu5197 0.89 -0.5
193,949 - Atu5197 0.89 -1.3
193,949 - Atu5197 0.89 +0.1
194,021 - +1.8
194,131 - +2.0
194,144 + -1.0
194,152 - +2.9
194,174 + -0.9
194,306 - Atu5198 0.22 +0.1
194,306 - Atu5198 0.22 +0.5
194,324 + Atu5198 0.23 -1.4
194,332 - Atu5198 0.24 +1.0
194,418 - Atu5198 0.33 +0.4
194,418 - Atu5198 0.33 -0.1
194,454 - Atu5198 0.36 +0.5
194,456 + Atu5198 0.36 -0.3
194,464 - Atu5198 0.37 -2.3
194,464 - Atu5198 0.37 +0.3
194,469 + Atu5198 0.38 +0.3
194,477 - Atu5198 0.38 -1.6
194,477 - Atu5198 0.38 +1.2
194,509 + Atu5198 0.42 +0.1
194,559 - Atu5198 0.47 +0.5
194,612 + Atu5198 0.52 +1.8
194,620 - Atu5198 0.53 +0.7
194,650 + Atu5198 0.55 -0.6
194,671 + Atu5198 0.58 -1.1
194,718 + Atu5198 0.62 -1.3
194,722 - Atu5198 0.63 -0.7
194,726 - Atu5198 0.63 +0.2
194,734 + Atu5198 0.64 +1.8
194,734 + Atu5198 0.64 +0.1
194,741 - Atu5198 0.64 +0.5
194,741 - Atu5198 0.64 -1.6
194,741 - Atu5198 0.64 +2.0
194,742 - Atu5198 0.65 -1.4
194,742 - Atu5198 0.65 +0.9
194,802 + Atu5198 0.70 +0.1
194,850 - Atu5198 0.75 -0.8
194,873 - Atu5198 0.77 +0.3
194,915 + Atu5198 0.82 +3.1
194,940 + Atu5198 0.84 -2.1
194,940 + Atu5198 0.84 +0.5
194,940 + Atu5198 0.84 -0.3
194,940 + Atu5198 0.84 -0.7
194,940 + Atu5198 0.84 +0.4
194,948 - Atu5198 0.85 +0.4
194,948 - Atu5198 0.85 -0.4
194,948 - Atu5198 0.85 -0.5
194,948 - Atu5198 0.85 -1.6
194,948 - Atu5198 0.85 +0.4
194,963 + Atu5198 0.86 +0.4
194,963 + Atu5198 0.86 +0.1
194,963 + Atu5198 0.86 +1.0
194,963 + Atu5198 0.86 +0.2
194,963 + Atu5198 0.86 +0.1
194,963 + Atu5198 0.86 +0.1
194,963 + Atu5198 0.86 +0.3
194,971 - Atu5198 0.87 +1.4
194,971 - Atu5198 0.87 +3.7
194,971 - Atu5198 0.87 -0.1
194,971 - Atu5198 0.87 -1.7
194,971 - Atu5198 0.87 +1.4
194,971 - Atu5198 0.87 -1.4
194,971 - Atu5198 0.87 -0.5
194,971 - Atu5198 0.87 +0.6
194,971 - Atu5198 0.87 -2.0

Or see this region's nucleotide sequence