Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3416 and Atu3417 are separated by 25 nucleotides Atu3417 and Atu3418 are separated by 13 nucleotides Atu3418 and Atu3419 are separated by 23 nucleotides
Atu3416: Atu3416 - ABC transporter substrate binding protein, at 463,331 to 464,269
Atu3416
Atu3417: Atu3417 - ABC transporter permease, at 464,295 to 466,106
Atu3417
Atu3418: Atu3418 - acetyltransferase, at 466,120 to 466,665
Atu3418
Atu3419: Atu3419 - hippurate hydrolase, at 466,689 to 467,876
Atu3419
Position (kb) 464
465
466
467 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 463.308 kb on + strand at 463.372 kb on - strand at 463.372 kb on - strand at 463.378 kb on + strand at 463.378 kb on - strand at 463.438 kb on - strand, within Atu3416 at 463.444 kb on + strand, within Atu3416 at 463.465 kb on - strand, within Atu3416 at 463.553 kb on - strand, within Atu3416 at 463.691 kb on - strand, within Atu3416 at 463.725 kb on - strand, within Atu3416 at 463.783 kb on + strand, within Atu3416 at 463.796 kb on + strand, within Atu3416 at 463.894 kb on - strand, within Atu3416 at 463.940 kb on + strand, within Atu3416 at 463.949 kb on - strand, within Atu3416 at 464.078 kb on - strand, within Atu3416 at 464.181 kb on - strand at 464.341 kb on - strand at 464.351 kb on - strand at 464.351 kb on - strand at 464.390 kb on - strand at 464.476 kb on + strand at 464.485 kb on + strand, within Atu3417 at 464.507 kb on + strand, within Atu3417 at 464.507 kb on + strand, within Atu3417 at 464.507 kb on + strand, within Atu3417 at 464.507 kb on + strand, within Atu3417 at 464.515 kb on - strand, within Atu3417 at 464.515 kb on - strand, within Atu3417 at 464.515 kb on - strand, within Atu3417 at 464.589 kb on + strand, within Atu3417 at 464.624 kb on - strand, within Atu3417 at 464.846 kb on - strand, within Atu3417 at 464.911 kb on - strand, within Atu3417 at 464.935 kb on + strand, within Atu3417 at 464.984 kb on + strand, within Atu3417 at 464.992 kb on - strand, within Atu3417 at 464.992 kb on - strand, within Atu3417 at 464.992 kb on - strand, within Atu3417 at 465.149 kb on + strand, within Atu3417 at 465.190 kb on + strand, within Atu3417 at 465.285 kb on + strand, within Atu3417 at 465.310 kb on - strand, within Atu3417 at 465.324 kb on + strand, within Atu3417 at 465.324 kb on + strand, within Atu3417 at 465.342 kb on - strand, within Atu3417 at 465.342 kb on - strand, within Atu3417 at 465.360 kb on + strand, within Atu3417 at 465.371 kb on + strand, within Atu3417 at 465.387 kb on - strand, within Atu3417 at 465.414 kb on + strand, within Atu3417 at 465.499 kb on + strand, within Atu3417 at 465.501 kb on - strand, within Atu3417 at 465.507 kb on - strand, within Atu3417 at 465.521 kb on + strand, within Atu3417 at 465.598 kb on + strand, within Atu3417 at 465.598 kb on + strand, within Atu3417 at 465.797 kb on - strand, within Atu3417 at 465.804 kb on - strand, within Atu3417 at 465.821 kb on - strand, within Atu3417 at 465.837 kb on + strand, within Atu3417 at 465.845 kb on - strand, within Atu3417 at 465.845 kb on - strand, within Atu3417 at 465.885 kb on - strand, within Atu3417 at 466.027 kb on + strand at 466.181 kb on + strand, within Atu3418 at 466.206 kb on + strand, within Atu3418 at 466.221 kb on + strand, within Atu3418 at 466.269 kb on + strand, within Atu3418 at 466.269 kb on + strand, within Atu3418 at 466.322 kb on + strand, within Atu3418 at 466.329 kb on - strand, within Atu3418 at 466.329 kb on - strand, within Atu3418 at 466.329 kb on - strand, within Atu3418 at 466.403 kb on + strand, within Atu3418 at 466.411 kb on - strand, within Atu3418 at 466.411 kb on - strand, within Atu3418 at 466.412 kb on + strand, within Atu3418 at 466.412 kb on + strand, within Atu3418 at 466.454 kb on + strand, within Atu3418 at 466.539 kb on + strand, within Atu3418 at 466.597 kb on + strand, within Atu3418 at 466.771 kb on - strand at 466.798 kb on + strand at 467.007 kb on - strand, within Atu3419 at 467.019 kb on - strand, within Atu3419
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 463,308 + +0.3 463,372 - -0.4 463,372 - -1.4 463,378 + -0.3 463,378 - +0.4 463,438 - Atu3416 0.11 +0.3 463,444 + Atu3416 0.12 -0.4 463,465 - Atu3416 0.14 +3.9 463,553 - Atu3416 0.24 -1.4 463,691 - Atu3416 0.38 +0.1 463,725 - Atu3416 0.42 -1.8 463,783 + Atu3416 0.48 +0.2 463,796 + Atu3416 0.50 +0.1 463,894 - Atu3416 0.60 -1.8 463,940 + Atu3416 0.65 -1.2 463,949 - Atu3416 0.66 +0.5 464,078 - Atu3416 0.80 +2.5 464,181 - +0.9 464,341 - -1.8 464,351 - -0.5 464,351 - -0.8 464,390 - -0.7 464,476 + +0.2 464,485 + Atu3417 0.10 -2.6 464,507 + Atu3417 0.12 +1.3 464,507 + Atu3417 0.12 +2.1 464,507 + Atu3417 0.12 -0.4 464,507 + Atu3417 0.12 -0.1 464,515 - Atu3417 0.12 -0.6 464,515 - Atu3417 0.12 +0.9 464,515 - Atu3417 0.12 +0.3 464,589 + Atu3417 0.16 -1.8 464,624 - Atu3417 0.18 +1.5 464,846 - Atu3417 0.30 -0.7 464,911 - Atu3417 0.34 +0.1 464,935 + Atu3417 0.35 +0.3 464,984 + Atu3417 0.38 +2.2 464,992 - Atu3417 0.38 +0.2 464,992 - Atu3417 0.38 -2.7 464,992 - Atu3417 0.38 +1.9 465,149 + Atu3417 0.47 -0.2 465,190 + Atu3417 0.49 -1.5 465,285 + Atu3417 0.55 -0.2 465,310 - Atu3417 0.56 -0.5 465,324 + Atu3417 0.57 +0.1 465,324 + Atu3417 0.57 +0.9 465,342 - Atu3417 0.58 -0.4 465,342 - Atu3417 0.58 +0.0 465,360 + Atu3417 0.59 -1.2 465,371 + Atu3417 0.59 -0.9 465,387 - Atu3417 0.60 +0.3 465,414 + Atu3417 0.62 -1.0 465,499 + Atu3417 0.66 -2.6 465,501 - Atu3417 0.67 +0.0 465,507 - Atu3417 0.67 +2.7 465,521 + Atu3417 0.68 +0.2 465,598 + Atu3417 0.72 -1.6 465,598 + Atu3417 0.72 +0.4 465,797 - Atu3417 0.83 -0.3 465,804 - Atu3417 0.83 +1.2 465,821 - Atu3417 0.84 -0.7 465,837 + Atu3417 0.85 +1.2 465,845 - Atu3417 0.86 -0.6 465,845 - Atu3417 0.86 +0.2 465,885 - Atu3417 0.88 +0.2 466,027 + -2.2 466,181 + Atu3418 0.11 -0.3 466,206 + Atu3418 0.16 -0.8 466,221 + Atu3418 0.18 +0.2 466,269 + Atu3418 0.27 -0.1 466,269 + Atu3418 0.27 +2.7 466,322 + Atu3418 0.37 +0.2 466,329 - Atu3418 0.38 -0.1 466,329 - Atu3418 0.38 +0.0 466,329 - Atu3418 0.38 +0.8 466,403 + Atu3418 0.52 +0.7 466,411 - Atu3418 0.53 -1.0 466,411 - Atu3418 0.53 -1.9 466,412 + Atu3418 0.53 -0.6 466,412 + Atu3418 0.53 +1.9 466,454 + Atu3418 0.61 +0.4 466,539 + Atu3418 0.77 +1.7 466,597 + Atu3418 0.87 +0.1 466,771 - +0.6 466,798 + -1.0 467,007 - Atu3419 0.27 -0.5 467,019 - Atu3419 0.28 +0.1
Or see this region's nucleotide sequence