Strain Fitness in Agrobacterium fabrum C58 around Atu2670

Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu2668 and Atu2669 are separated by 132 nucleotidesAtu2669 and Atu2670 are separated by 38 nucleotidesAtu2670 and Atu2671 overlap by 4 nucleotidesAtu2671 and Atu2672 are separated by 106 nucleotides Atu2668: Atu2668 - oxidoreductase, at 2,652,774 to 2,653,628 Atu2668 Atu2669: Atu2669 - RhtB family transporter, at 2,653,761 to 2,654,408 Atu2669 Atu2670: Atu2670 - ABC transporter, nucleotide binding/ATPase protein, at 2,654,447 to 2,655,241 Atu2670 Atu2671: Atu2671 - ABC transporter, membrane spanning protein, at 2,655,238 to 2,656,119 Atu2671 Atu2672: Atu2672 - hypothetical protein, at 2,656,226 to 2,657,179 Atu2672 Position (kb) 2654 2655 2656Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2653.526 kb on - strand, within Atu2668at 2653.550 kb on - strandat 2653.550 kb on - strandat 2653.550 kb on - strandat 2653.550 kb on - strandat 2653.550 kb on - strandat 2653.550 kb on - strandat 2653.554 kb on + strandat 2653.554 kb on + strandat 2653.562 kb on - strandat 2653.562 kb on - strandat 2653.802 kb on - strandat 2653.834 kb on + strand, within Atu2669at 2653.842 kb on - strand, within Atu2669at 2653.858 kb on + strand, within Atu2669at 2653.866 kb on - strand, within Atu2669at 2654.146 kb on + strand, within Atu2669at 2654.147 kb on + strand, within Atu2669at 2654.402 kb on - strandat 2654.595 kb on + strand, within Atu2670at 2654.603 kb on - strand, within Atu2670at 2654.780 kb on + strand, within Atu2670at 2654.790 kb on + strand, within Atu2670at 2654.808 kb on - strand, within Atu2670at 2654.929 kb on + strand, within Atu2670at 2655.083 kb on + strand, within Atu2670at 2655.125 kb on - strand, within Atu2670at 2655.201 kb on - strandat 2655.224 kb on - strandat 2655.224 kb on - strandat 2655.324 kb on + strandat 2655.324 kb on + strandat 2655.332 kb on - strand, within Atu2671at 2655.332 kb on - strand, within Atu2671at 2655.341 kb on + strand, within Atu2671at 2655.351 kb on + strand, within Atu2671at 2655.351 kb on + strand, within Atu2671at 2655.391 kb on - strand, within Atu2671at 2655.498 kb on - strand, within Atu2671at 2655.596 kb on + strand, within Atu2671at 2655.668 kb on + strand, within Atu2671at 2655.746 kb on - strand, within Atu2671at 2655.746 kb on - strand, within Atu2671at 2655.796 kb on - strand, within Atu2671at 2655.815 kb on - strand, within Atu2671at 2655.893 kb on - strand, within Atu2671at 2656.095 kb on - strandat 2656.217 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
remove
2,653,526 - Atu2668 0.88 +2.6
2,653,550 - -0.6
2,653,550 - +1.3
2,653,550 - +2.2
2,653,550 - -0.9
2,653,550 - -1.4
2,653,550 - +0.4
2,653,554 + +0.7
2,653,554 + +1.7
2,653,562 - -0.2
2,653,562 - +0.1
2,653,802 - +1.1
2,653,834 + Atu2669 0.11 -1.6
2,653,842 - Atu2669 0.12 -0.3
2,653,858 + Atu2669 0.15 -1.1
2,653,866 - Atu2669 0.16 +1.8
2,654,146 + Atu2669 0.59 +0.3
2,654,147 + Atu2669 0.60 +1.0
2,654,402 - -1.2
2,654,595 + Atu2670 0.19 +0.3
2,654,603 - Atu2670 0.20 -1.3
2,654,780 + Atu2670 0.42 -2.6
2,654,790 + Atu2670 0.43 +0.2
2,654,808 - Atu2670 0.45 -2.2
2,654,929 + Atu2670 0.61 +0.0
2,655,083 + Atu2670 0.80 -1.5
2,655,125 - Atu2670 0.85 +0.4
2,655,201 - -0.5
2,655,224 - +0.5
2,655,224 - -1.6
2,655,324 + +0.7
2,655,324 + -2.0
2,655,332 - Atu2671 0.11 +1.0
2,655,332 - Atu2671 0.11 -0.1
2,655,341 + Atu2671 0.12 +0.6
2,655,351 + Atu2671 0.13 +1.4
2,655,351 + Atu2671 0.13 +1.6
2,655,391 - Atu2671 0.17 -0.3
2,655,498 - Atu2671 0.29 +0.8
2,655,596 + Atu2671 0.41 +0.6
2,655,668 + Atu2671 0.49 +4.5
2,655,746 - Atu2671 0.58 +0.3
2,655,746 - Atu2671 0.58 -0.1
2,655,796 - Atu2671 0.63 +0.2
2,655,815 - Atu2671 0.65 +0.2
2,655,893 - Atu2671 0.74 -0.5
2,656,095 - +0.4
2,656,217 + -0.9

Or see this region's nucleotide sequence