Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0281 and Atu0282 are separated by 83 nucleotides Atu0282 and Atu0283 overlap by 4 nucleotides Atu0283 and Atu0284 are separated by 78 nucleotides
Atu0281: Atu0281 - GMP synthase, at 275,073 to 276,650
Atu0281
Atu0282: Atu0282 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 276,734 to 277,372
Atu0282
Atu0283: Atu0283 - hypothetical protein, at 277,369 to 277,818
Atu0283
Atu0284: Atu0284 - tryptophan-rich sensory protein, at 277,897 to 278,349
Atu0284
Position (kb) 276
277
278 Strain fitness (log2 ratio) -2
-1
0
1
2 at 276.752 kb on + strand at 276.775 kb on + strand at 276.896 kb on + strand, within Atu0282 at 276.906 kb on + strand, within Atu0282 at 276.957 kb on + strand, within Atu0282 at 276.963 kb on - strand, within Atu0282 at 276.965 kb on - strand, within Atu0282 at 277.130 kb on + strand, within Atu0282 at 277.273 kb on - strand, within Atu0282 at 277.273 kb on - strand, within Atu0282 at 277.409 kb on - strand at 277.452 kb on + strand, within Atu0283 at 277.452 kb on + strand, within Atu0283 at 277.452 kb on + strand, within Atu0283 at 277.460 kb on - strand, within Atu0283 at 277.460 kb on - strand, within Atu0283 at 277.460 kb on - strand, within Atu0283 at 277.460 kb on - strand, within Atu0283 at 277.548 kb on + strand, within Atu0283 at 277.567 kb on + strand, within Atu0283 at 277.579 kb on + strand, within Atu0283 at 277.662 kb on - strand, within Atu0283 at 277.695 kb on + strand, within Atu0283 at 277.703 kb on - strand, within Atu0283 at 277.749 kb on + strand, within Atu0283 at 277.752 kb on - strand, within Atu0283 at 277.823 kb on - strand at 277.834 kb on + strand at 277.842 kb on - strand at 277.854 kb on + strand at 277.867 kb on + strand at 277.873 kb on + strand at 277.877 kb on + strand at 277.900 kb on + strand at 277.908 kb on + strand at 277.908 kb on - strand at 277.927 kb on - strand at 277.950 kb on + strand, within Atu0284 at 277.951 kb on + strand, within Atu0284 at 277.951 kb on + strand, within Atu0284 at 277.951 kb on + strand, within Atu0284 at 277.959 kb on - strand, within Atu0284 at 277.993 kb on + strand, within Atu0284 at 277.996 kb on + strand, within Atu0284 at 278.036 kb on - strand, within Atu0284 at 278.117 kb on + strand, within Atu0284 at 278.119 kb on + strand, within Atu0284 at 278.125 kb on - strand, within Atu0284 at 278.126 kb on - strand, within Atu0284 at 278.198 kb on + strand, within Atu0284 at 278.201 kb on - strand, within Atu0284 at 278.206 kb on - strand, within Atu0284
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 276,752 + +0.2 276,775 + +0.7 276,896 + Atu0282 0.25 -0.2 276,906 + Atu0282 0.27 -1.7 276,957 + Atu0282 0.35 -0.5 276,963 - Atu0282 0.36 -0.8 276,965 - Atu0282 0.36 -1.0 277,130 + Atu0282 0.62 -1.3 277,273 - Atu0282 0.84 +0.0 277,273 - Atu0282 0.84 +2.2 277,409 - -0.9 277,452 + Atu0283 0.18 -1.0 277,452 + Atu0283 0.18 +0.2 277,452 + Atu0283 0.18 -2.4 277,460 - Atu0283 0.20 -0.1 277,460 - Atu0283 0.20 +0.6 277,460 - Atu0283 0.20 -2.1 277,460 - Atu0283 0.20 -1.5 277,548 + Atu0283 0.40 -0.2 277,567 + Atu0283 0.44 +0.4 277,579 + Atu0283 0.47 -2.0 277,662 - Atu0283 0.65 -0.8 277,695 + Atu0283 0.72 -0.3 277,703 - Atu0283 0.74 +0.0 277,749 + Atu0283 0.84 +0.1 277,752 - Atu0283 0.85 +1.8 277,823 - -0.7 277,834 + -0.0 277,842 - +2.6 277,854 + +0.5 277,867 + -1.2 277,873 + +2.4 277,877 + -2.7 277,900 + +0.9 277,908 + +0.9 277,908 - -0.1 277,927 - -0.1 277,950 + Atu0284 0.12 -0.2 277,951 + Atu0284 0.12 -2.0 277,951 + Atu0284 0.12 +0.6 277,951 + Atu0284 0.12 -0.7 277,959 - Atu0284 0.14 -0.1 277,993 + Atu0284 0.21 -0.5 277,996 + Atu0284 0.22 +0.0 278,036 - Atu0284 0.31 +1.4 278,117 + Atu0284 0.49 -2.1 278,119 + Atu0284 0.49 +0.4 278,125 - Atu0284 0.50 -0.0 278,126 - Atu0284 0.51 -1.3 278,198 + Atu0284 0.66 -0.4 278,201 - Atu0284 0.67 -0.8 278,206 - Atu0284 0.68 -0.5
Or see this region's nucleotide sequence