Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0830 and Atu8138 are separated by 299 nucleotides Atu8138 and Atu0832 are separated by 173 nucleotides
Atu0830: Atu0830 - choline dehydrogenase, at 828,964 to 830,613
Atu0830
Atu8138: Atu8138 - hypothetical protein, at 830,913 to 831,188
Atu8138
Atu0832: Atu0832 - chloride channel protein, at 831,362 to 832,678
Atu0832
Position (kb) 830
831
832 Strain fitness (log2 ratio) -2
-1
0
1
2 at 829.955 kb on + strand, within Atu0830 at 829.978 kb on + strand, within Atu0830 at 830.000 kb on + strand, within Atu0830 at 830.008 kb on - strand, within Atu0830 at 830.134 kb on - strand, within Atu0830 at 830.136 kb on + strand, within Atu0830 at 830.290 kb on + strand, within Atu0830 at 830.569 kb on - strand at 830.587 kb on - strand at 830.620 kb on + strand at 830.810 kb on + strand at 830.811 kb on + strand at 830.834 kb on + strand at 830.853 kb on + strand at 830.853 kb on + strand at 830.866 kb on - strand at 830.947 kb on + strand, within Atu8138 at 831.025 kb on + strand, within Atu8138 at 831.259 kb on - strand at 831.372 kb on - strand at 831.383 kb on + strand at 831.408 kb on - strand at 831.461 kb on + strand at 831.561 kb on + strand, within Atu0832 at 831.569 kb on - strand, within Atu0832 at 831.730 kb on - strand, within Atu0832 at 831.764 kb on + strand, within Atu0832 at 831.764 kb on + strand, within Atu0832 at 831.820 kb on + strand, within Atu0832 at 831.820 kb on + strand, within Atu0832 at 831.820 kb on + strand, within Atu0832 at 831.820 kb on + strand, within Atu0832 at 831.820 kb on + strand, within Atu0832 at 831.820 kb on + strand, within Atu0832 at 831.828 kb on - strand, within Atu0832 at 831.828 kb on - strand, within Atu0832 at 831.828 kb on - strand, within Atu0832 at 831.828 kb on - strand, within Atu0832 at 831.828 kb on - strand, within Atu0832 at 831.913 kb on + strand, within Atu0832 at 831.942 kb on + strand, within Atu0832 at 831.950 kb on - strand, within Atu0832 at 831.961 kb on + strand, within Atu0832 at 832.063 kb on + strand, within Atu0832 at 832.094 kb on + strand, within Atu0832 at 832.125 kb on - strand, within Atu0832 at 832.176 kb on - strand, within Atu0832
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 829,955 + Atu0830 0.60 +0.5 829,978 + Atu0830 0.61 -0.6 830,000 + Atu0830 0.63 -0.2 830,008 - Atu0830 0.63 +0.3 830,134 - Atu0830 0.71 +1.3 830,136 + Atu0830 0.71 +0.9 830,290 + Atu0830 0.80 +2.3 830,569 - +1.4 830,587 - +2.0 830,620 + -2.1 830,810 + +0.7 830,811 + -0.9 830,834 + -1.0 830,853 + +0.4 830,853 + -0.6 830,866 - +0.6 830,947 + Atu8138 0.12 -0.5 831,025 + Atu8138 0.41 -1.4 831,259 - +0.3 831,372 - -1.9 831,383 + -2.3 831,408 - +1.5 831,461 + -0.3 831,561 + Atu0832 0.15 -1.0 831,569 - Atu0832 0.16 +0.7 831,730 - Atu0832 0.28 +1.1 831,764 + Atu0832 0.31 +0.2 831,764 + Atu0832 0.31 +0.6 831,820 + Atu0832 0.35 +0.7 831,820 + Atu0832 0.35 +1.2 831,820 + Atu0832 0.35 -1.5 831,820 + Atu0832 0.35 +0.1 831,820 + Atu0832 0.35 +0.7 831,820 + Atu0832 0.35 -0.3 831,828 - Atu0832 0.35 +0.2 831,828 - Atu0832 0.35 +1.2 831,828 - Atu0832 0.35 -1.4 831,828 - Atu0832 0.35 +0.6 831,828 - Atu0832 0.35 +0.3 831,913 + Atu0832 0.42 -0.1 831,942 + Atu0832 0.44 -0.4 831,950 - Atu0832 0.45 -0.0 831,961 + Atu0832 0.45 +0.5 832,063 + Atu0832 0.53 -0.3 832,094 + Atu0832 0.56 +0.0 832,125 - Atu0832 0.58 -0.6 832,176 - Atu0832 0.62 +0.0
Or see this region's nucleotide sequence