Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6190 and Atu6191 are separated by 66 nucleotides
Atu6190: Atu6190 - exported virulence protein, at 206,256 to 207,926
Atu6190
Atu6191: Atu6191 - virA/G regulated protein, at 207,993 to 210,047
Atu6191
Position (kb) 207
208
209
210
211 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 207.014 kb on + strand, within Atu6190 at 207.024 kb on + strand, within Atu6190 at 207.123 kb on - strand, within Atu6190 at 207.150 kb on - strand, within Atu6190 at 207.211 kb on - strand, within Atu6190 at 207.220 kb on + strand, within Atu6190 at 207.225 kb on + strand, within Atu6190 at 207.225 kb on + strand, within Atu6190 at 207.225 kb on + strand, within Atu6190 at 207.230 kb on + strand, within Atu6190 at 207.233 kb on - strand, within Atu6190 at 207.233 kb on - strand, within Atu6190 at 207.235 kb on + strand, within Atu6190 at 207.298 kb on - strand, within Atu6190 at 207.330 kb on + strand, within Atu6190 at 207.364 kb on + strand, within Atu6190 at 207.384 kb on + strand, within Atu6190 at 207.384 kb on + strand, within Atu6190 at 207.545 kb on - strand, within Atu6190 at 207.593 kb on + strand, within Atu6190 at 207.601 kb on - strand, within Atu6190 at 207.628 kb on + strand, within Atu6190 at 207.636 kb on - strand, within Atu6190 at 207.728 kb on - strand, within Atu6190 at 207.740 kb on + strand, within Atu6190 at 207.740 kb on + strand, within Atu6190 at 207.787 kb on + strand at 207.787 kb on + strand at 207.792 kb on + strand at 207.805 kb on - strand at 207.852 kb on + strand at 207.885 kb on + strand at 207.885 kb on + strand at 207.893 kb on - strand at 207.893 kb on - strand at 207.909 kb on + strand at 207.909 kb on + strand at 207.909 kb on + strand at 207.909 kb on + strand at 207.909 kb on + strand at 207.917 kb on - strand at 207.917 kb on - strand at 207.917 kb on - strand at 207.919 kb on - strand at 207.931 kb on - strand at 207.954 kb on + strand at 207.983 kb on + strand at 208.041 kb on - strand at 208.077 kb on + strand at 208.114 kb on + strand at 208.114 kb on + strand at 208.124 kb on + strand at 208.132 kb on - strand at 208.145 kb on - strand at 208.181 kb on + strand at 208.243 kb on - strand, within Atu6191 at 208.339 kb on - strand, within Atu6191 at 208.356 kb on + strand, within Atu6191 at 208.387 kb on - strand, within Atu6191 at 208.393 kb on + strand, within Atu6191 at 208.393 kb on + strand, within Atu6191 at 208.401 kb on - strand, within Atu6191 at 208.401 kb on - strand, within Atu6191 at 208.401 kb on - strand, within Atu6191 at 208.529 kb on + strand, within Atu6191 at 208.529 kb on + strand, within Atu6191 at 208.529 kb on + strand, within Atu6191 at 208.537 kb on - strand, within Atu6191 at 208.537 kb on - strand, within Atu6191 at 208.537 kb on - strand, within Atu6191 at 208.537 kb on - strand, within Atu6191 at 208.537 kb on - strand, within Atu6191 at 208.537 kb on - strand, within Atu6191 at 208.539 kb on + strand, within Atu6191 at 208.573 kb on - strand, within Atu6191 at 208.575 kb on + strand, within Atu6191 at 208.656 kb on + strand, within Atu6191 at 208.695 kb on + strand, within Atu6191 at 208.695 kb on + strand, within Atu6191 at 208.703 kb on - strand, within Atu6191 at 208.703 kb on - strand, within Atu6191 at 208.745 kb on + strand, within Atu6191 at 208.753 kb on - strand, within Atu6191 at 208.760 kb on + strand, within Atu6191 at 208.811 kb on - strand, within Atu6191 at 208.833 kb on + strand, within Atu6191 at 208.864 kb on + strand, within Atu6191 at 208.894 kb on - strand, within Atu6191 at 208.895 kb on - strand, within Atu6191 at 208.951 kb on + strand, within Atu6191 at 208.959 kb on + strand, within Atu6191 at 209.034 kb on - strand, within Atu6191 at 209.041 kb on - strand, within Atu6191 at 209.041 kb on - strand, within Atu6191 at 209.042 kb on + strand, within Atu6191 at 209.046 kb on + strand, within Atu6191 at 209.067 kb on - strand, within Atu6191 at 209.069 kb on - strand, within Atu6191 at 209.123 kb on + strand, within Atu6191 at 209.131 kb on + strand, within Atu6191 at 209.131 kb on - strand, within Atu6191 at 209.158 kb on - strand, within Atu6191 at 209.162 kb on + strand, within Atu6191 at 209.162 kb on + strand, within Atu6191 at 209.170 kb on - strand, within Atu6191 at 209.170 kb on - strand, within Atu6191 at 209.175 kb on - strand, within Atu6191 at 209.212 kb on + strand, within Atu6191 at 209.231 kb on + strand, within Atu6191 at 209.231 kb on + strand, within Atu6191 at 209.239 kb on - strand, within Atu6191 at 209.244 kb on - strand, within Atu6191 at 209.305 kb on + strand, within Atu6191 at 209.323 kb on + strand, within Atu6191 at 209.440 kb on - strand, within Atu6191 at 209.500 kb on + strand, within Atu6191 at 209.536 kb on + strand, within Atu6191 at 209.554 kb on - strand, within Atu6191 at 209.613 kb on + strand, within Atu6191 at 209.682 kb on + strand, within Atu6191 at 209.690 kb on - strand, within Atu6191 at 209.706 kb on + strand, within Atu6191 at 209.706 kb on + strand, within Atu6191 at 209.720 kb on + strand, within Atu6191 at 209.726 kb on + strand, within Atu6191 at 209.744 kb on - strand, within Atu6191 at 209.787 kb on + strand, within Atu6191 at 209.846 kb on - strand at 209.869 kb on + strand at 209.913 kb on + strand at 209.936 kb on + strand at 209.936 kb on + strand at 209.999 kb on - strand at 210.033 kb on - strand at 210.085 kb on + strand at 210.085 kb on + strand at 210.093 kb on - strand at 210.095 kb on + strand at 210.104 kb on - strand at 210.111 kb on + strand at 210.118 kb on + strand at 210.119 kb on + strand at 210.143 kb on + strand at 210.143 kb on + strand at 210.179 kb on - strand at 210.190 kb on - strand at 210.205 kb on + strand at 210.236 kb on - strand at 210.245 kb on - strand at 210.278 kb on - strand at 210.310 kb on - strand at 210.316 kb on - strand at 210.352 kb on - strand at 210.377 kb on - strand at 210.436 kb on - strand at 210.451 kb on - strand at 210.453 kb on + strand at 210.487 kb on - strand at 210.523 kb on - strand at 210.523 kb on - strand at 210.523 kb on - strand at 210.523 kb on - strand at 210.550 kb on - strand at 210.578 kb on + strand at 210.617 kb on - strand at 210.630 kb on + strand at 210.631 kb on - strand at 210.632 kb on + strand at 210.645 kb on - strand at 210.729 kb on + strand at 210.780 kb on - strand at 210.803 kb on - strand at 210.808 kb on - strand at 210.829 kb on + strand at 210.859 kb on + strand at 210.866 kb on + strand at 210.894 kb on + strand at 210.894 kb on + strand at 210.897 kb on - strand at 210.897 kb on - strand at 210.902 kb on - strand at 210.912 kb on - strand at 210.959 kb on - strand at 210.969 kb on - strand at 211.029 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 207,014 + Atu6190 0.45 +0.5 207,024 + Atu6190 0.46 +1.3 207,123 - Atu6190 0.52 -1.5 207,150 - Atu6190 0.54 -1.2 207,211 - Atu6190 0.57 -0.1 207,220 + Atu6190 0.58 -1.0 207,225 + Atu6190 0.58 +1.0 207,225 + Atu6190 0.58 +0.4 207,225 + Atu6190 0.58 -1.0 207,230 + Atu6190 0.58 +1.6 207,233 - Atu6190 0.58 -0.8 207,233 - Atu6190 0.58 -0.1 207,235 + Atu6190 0.59 +1.2 207,298 - Atu6190 0.62 +2.7 207,330 + Atu6190 0.64 +1.9 207,364 + Atu6190 0.66 -3.2 207,384 + Atu6190 0.68 +2.3 207,384 + Atu6190 0.68 +2.1 207,545 - Atu6190 0.77 -3.0 207,593 + Atu6190 0.80 +0.5 207,601 - Atu6190 0.80 +0.8 207,628 + Atu6190 0.82 -0.9 207,636 - Atu6190 0.83 +0.7 207,728 - Atu6190 0.88 -0.4 207,740 + Atu6190 0.89 -0.5 207,740 + Atu6190 0.89 +1.6 207,787 + +0.0 207,787 + -0.7 207,792 + +1.7 207,805 - +0.4 207,852 + +0.8 207,885 + +0.1 207,885 + -0.6 207,893 - +0.5 207,893 - -0.8 207,909 + +2.5 207,909 + -0.1 207,909 + +0.6 207,909 + +0.6 207,909 + -1.4 207,917 - +0.1 207,917 - -4.4 207,917 - -2.3 207,919 - +0.5 207,931 - -2.2 207,954 + +1.1 207,983 + -0.1 208,041 - -0.2 208,077 + -1.2 208,114 + +0.0 208,114 + +1.1 208,124 + +0.6 208,132 - -0.8 208,145 - +0.5 208,181 + +2.4 208,243 - Atu6191 0.12 +0.1 208,339 - Atu6191 0.17 -1.0 208,356 + Atu6191 0.18 +0.1 208,387 - Atu6191 0.19 +1.3 208,393 + Atu6191 0.19 +0.6 208,393 + Atu6191 0.19 -0.1 208,401 - Atu6191 0.20 -0.3 208,401 - Atu6191 0.20 +1.4 208,401 - Atu6191 0.20 -1.1 208,529 + Atu6191 0.26 +0.6 208,529 + Atu6191 0.26 -0.5 208,529 + Atu6191 0.26 -0.0 208,537 - Atu6191 0.26 -0.6 208,537 - Atu6191 0.26 -0.6 208,537 - Atu6191 0.26 -0.2 208,537 - Atu6191 0.26 +0.0 208,537 - Atu6191 0.26 +1.2 208,537 - Atu6191 0.26 -3.2 208,539 + Atu6191 0.27 -0.3 208,573 - Atu6191 0.28 +0.5 208,575 + Atu6191 0.28 +0.2 208,656 + Atu6191 0.32 -0.3 208,695 + Atu6191 0.34 +1.9 208,695 + Atu6191 0.34 -0.5 208,703 - Atu6191 0.35 -0.9 208,703 - Atu6191 0.35 -2.4 208,745 + Atu6191 0.37 -0.4 208,753 - Atu6191 0.37 -1.7 208,760 + Atu6191 0.37 -1.1 208,811 - Atu6191 0.40 -3.0 208,833 + Atu6191 0.41 -0.2 208,864 + Atu6191 0.42 -0.3 208,894 - Atu6191 0.44 -0.7 208,895 - Atu6191 0.44 -0.7 208,951 + Atu6191 0.47 -1.3 208,959 + Atu6191 0.47 -1.1 209,034 - Atu6191 0.51 -0.6 209,041 - Atu6191 0.51 -0.5 209,041 - Atu6191 0.51 -2.4 209,042 + Atu6191 0.51 -0.5 209,046 + Atu6191 0.51 -0.1 209,067 - Atu6191 0.52 -0.4 209,069 - Atu6191 0.52 -0.6 209,123 + Atu6191 0.55 -0.8 209,131 + Atu6191 0.55 -0.4 209,131 - Atu6191 0.55 -0.3 209,158 - Atu6191 0.57 -0.3 209,162 + Atu6191 0.57 +0.1 209,162 + Atu6191 0.57 +0.7 209,170 - Atu6191 0.57 +0.6 209,170 - Atu6191 0.57 -0.4 209,175 - Atu6191 0.58 -0.6 209,212 + Atu6191 0.59 -1.6 209,231 + Atu6191 0.60 -1.4 209,231 + Atu6191 0.60 -0.2 209,239 - Atu6191 0.61 -0.3 209,244 - Atu6191 0.61 -0.4 209,305 + Atu6191 0.64 -0.3 209,323 + Atu6191 0.65 +0.7 209,440 - Atu6191 0.70 +0.5 209,500 + Atu6191 0.73 +0.5 209,536 + Atu6191 0.75 -1.1 209,554 - Atu6191 0.76 -1.3 209,613 + Atu6191 0.79 -1.0 209,682 + Atu6191 0.82 +4.5 209,690 - Atu6191 0.83 +1.3 209,706 + Atu6191 0.83 +0.5 209,706 + Atu6191 0.83 -0.6 209,720 + Atu6191 0.84 -0.2 209,726 + Atu6191 0.84 +1.7 209,744 - Atu6191 0.85 -1.3 209,787 + Atu6191 0.87 +0.1 209,846 - +0.1 209,869 + +0.1 209,913 + -0.4 209,936 + -0.5 209,936 + -0.1 209,999 - +2.2 210,033 - -0.1 210,085 + -1.2 210,085 + +0.5 210,093 - -2.7 210,095 + -0.8 210,104 - -1.5 210,111 + -1.6 210,118 + +1.9 210,119 + +0.8 210,143 + -3.0 210,143 + -1.1 210,179 - -0.4 210,190 - +0.2 210,205 + +0.9 210,236 - -0.7 210,245 - -0.5 210,278 - -0.1 210,310 - -0.7 210,316 - +2.6 210,352 - -0.1 210,377 - +0.2 210,436 - -0.3 210,451 - -0.1 210,453 + -0.7 210,487 - +0.1 210,523 - +0.2 210,523 - -1.0 210,523 - -0.5 210,523 - +0.1 210,550 - -0.1 210,578 + -0.4 210,617 - -1.7 210,630 + +0.9 210,631 - -0.3 210,632 + +0.5 210,645 - -0.4 210,729 + -0.9 210,780 - +0.0 210,803 - -0.5 210,808 - -0.3 210,829 + -0.2 210,859 + -1.0 210,866 + +1.2 210,894 + -1.5 210,894 + +0.3 210,897 - -0.3 210,897 - +0.2 210,902 - +0.2 210,912 - +0.1 210,959 - -0.7 210,969 - +0.8 211,029 + +2.1
Or see this region's nucleotide sequence