Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3224 and Atu3225 overlap by 4 nucleotides Atu3225 and Atu3226 are separated by 17 nucleotides Atu3226 and Atu3227 are separated by 217 nucleotides
Atu3224: Atu3224 - ribose ABC transporter permease, at 238,394 to 239,440
Atu3224
Atu3225: Atu3225 - ABC transporter permease, at 239,437 to 240,417
Atu3225
Atu3226: Atu3226 - GntR family transcriptional regulator, at 240,435 to 241,169
Atu3226
Atu3227: Atu3227 - AraC family transcriptional regulator, at 241,387 to 242,325
Atu3227
Position (kb) 240
241
242 Strain fitness (log2 ratio) -2
-1
0
1
2 at 239.492 kb on + strand at 239.502 kb on - strand at 239.631 kb on - strand, within Atu3225 at 239.641 kb on + strand, within Atu3225 at 239.649 kb on - strand, within Atu3225 at 239.649 kb on - strand, within Atu3225 at 239.660 kb on - strand, within Atu3225 at 239.701 kb on + strand, within Atu3225 at 239.709 kb on - strand, within Atu3225 at 239.833 kb on - strand, within Atu3225 at 239.915 kb on + strand, within Atu3225 at 239.929 kb on - strand, within Atu3225 at 240.127 kb on + strand, within Atu3225 at 240.127 kb on + strand, within Atu3225 at 240.134 kb on - strand, within Atu3225 at 240.135 kb on - strand, within Atu3225 at 240.135 kb on - strand, within Atu3225 at 240.279 kb on - strand, within Atu3225 at 240.301 kb on + strand, within Atu3225 at 240.363 kb on - strand at 240.404 kb on - strand at 240.487 kb on + strand at 240.529 kb on + strand, within Atu3226 at 240.549 kb on - strand, within Atu3226 at 240.551 kb on + strand, within Atu3226 at 240.597 kb on + strand, within Atu3226 at 240.597 kb on + strand, within Atu3226 at 240.605 kb on - strand, within Atu3226 at 240.605 kb on - strand, within Atu3226 at 240.605 kb on - strand, within Atu3226 at 240.609 kb on + strand, within Atu3226 at 240.733 kb on + strand, within Atu3226 at 240.807 kb on + strand, within Atu3226 at 240.927 kb on + strand, within Atu3226 at 241.160 kb on + strand at 241.164 kb on + strand at 241.179 kb on + strand at 241.201 kb on - strand at 241.352 kb on + strand at 241.569 kb on - strand, within Atu3227 at 241.604 kb on + strand, within Atu3227 at 241.612 kb on - strand, within Atu3227 at 241.612 kb on - strand, within Atu3227 at 241.624 kb on - strand, within Atu3227 at 241.919 kb on + strand, within Atu3227 at 241.920 kb on - strand, within Atu3227 at 241.924 kb on + strand, within Atu3227 at 241.937 kb on - strand, within Atu3227 at 242.040 kb on + strand, within Atu3227
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 239,492 + -0.9 239,502 - -0.6 239,631 - Atu3225 0.20 +0.4 239,641 + Atu3225 0.21 -2.5 239,649 - Atu3225 0.22 -0.2 239,649 - Atu3225 0.22 -0.3 239,660 - Atu3225 0.23 +0.7 239,701 + Atu3225 0.27 +0.7 239,709 - Atu3225 0.28 +1.7 239,833 - Atu3225 0.40 +0.3 239,915 + Atu3225 0.49 +0.4 239,929 - Atu3225 0.50 +1.1 240,127 + Atu3225 0.70 +0.3 240,127 + Atu3225 0.70 +0.8 240,134 - Atu3225 0.71 -0.3 240,135 - Atu3225 0.71 -0.0 240,135 - Atu3225 0.71 -0.2 240,279 - Atu3225 0.86 -0.8 240,301 + Atu3225 0.88 +1.1 240,363 - -1.3 240,404 - +1.1 240,487 + -0.5 240,529 + Atu3226 0.13 -0.4 240,549 - Atu3226 0.16 +1.5 240,551 + Atu3226 0.16 -1.4 240,597 + Atu3226 0.22 -1.2 240,597 + Atu3226 0.22 -0.2 240,605 - Atu3226 0.23 +0.0 240,605 - Atu3226 0.23 -1.1 240,605 - Atu3226 0.23 -1.7 240,609 + Atu3226 0.24 +0.4 240,733 + Atu3226 0.41 -2.1 240,807 + Atu3226 0.51 +1.4 240,927 + Atu3226 0.67 -1.2 241,160 + -0.9 241,164 + +0.4 241,179 + -0.6 241,201 - -0.5 241,352 + +0.3 241,569 - Atu3227 0.19 -0.1 241,604 + Atu3227 0.23 -0.2 241,612 - Atu3227 0.24 -0.7 241,612 - Atu3227 0.24 +0.4 241,624 - Atu3227 0.25 +0.1 241,919 + Atu3227 0.57 +0.6 241,920 - Atu3227 0.57 +0.6 241,924 + Atu3227 0.57 +2.6 241,937 - Atu3227 0.59 -0.2 242,040 + Atu3227 0.70 +0.7
Or see this region's nucleotide sequence