Strain Fitness in Agrobacterium fabrum C58 around Atu0724

Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu0723 and Atu0724 are separated by 50 nucleotidesAtu0724 and Atu0725 are separated by 63 nucleotides Atu0723: Atu0723 - FAD dependent oxidoreductase, at 722,705 to 724,141 Atu0723 Atu0724: Atu0724 - hypothetical protein, at 724,192 to 725,169 Atu0724 Atu0725: Atu0725 - hypothetical protein, at 725,233 to 725,844 Atu0725 Position (kb) 724 725 726Strain fitness (log2 ratio) -2 -1 0 1 2at 723.369 kb on - strand, within Atu0723at 723.412 kb on + strand, within Atu0723at 723.527 kb on + strand, within Atu0723at 723.734 kb on + strand, within Atu0723at 725.174 kb on - strandat 725.259 kb on + strandat 725.372 kb on - strand, within Atu0725at 725.615 kb on - strand, within Atu0725at 725.617 kb on + strand, within Atu0725at 725.703 kb on + strand, within Atu0725at 725.724 kb on + strand, within Atu0725at 725.724 kb on + strand, within Atu0725at 725.779 kb on - strand, within Atu0725at 725.779 kb on - strand, within Atu0725at 725.779 kb on - strand, within Atu0725at 725.779 kb on - strand, within Atu0725at 725.800 kb on - strandat 725.805 kb on - strandat 725.847 kb on - strandat 725.877 kb on + strandat 725.878 kb on + strandat 725.896 kb on - strandat 725.903 kb on + strandat 725.927 kb on + strandat 725.929 kb on + strandat 725.937 kb on - strandat 726.083 kb on + strandat 726.120 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
remove
723,369 - Atu0723 0.46 +1.7
723,412 + Atu0723 0.49 +1.7
723,527 + Atu0723 0.57 +2.7
723,734 + Atu0723 0.72 +1.1
725,174 - -1.9
725,259 + -0.7
725,372 - Atu0725 0.23 +0.3
725,615 - Atu0725 0.62 +1.9
725,617 + Atu0725 0.63 -0.9
725,703 + Atu0725 0.77 -0.1
725,724 + Atu0725 0.80 -2.6
725,724 + Atu0725 0.80 -0.3
725,779 - Atu0725 0.89 +0.7
725,779 - Atu0725 0.89 -0.1
725,779 - Atu0725 0.89 +0.2
725,779 - Atu0725 0.89 +1.4
725,800 - -2.3
725,805 - +1.4
725,847 - -1.1
725,877 + -1.7
725,878 + +0.4
725,896 - -0.4
725,903 + +0.7
725,927 + -0.3
725,929 + -1.6
725,937 - +0.0
726,083 + -0.7
726,120 - -1.1

Or see this region's nucleotide sequence