Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0527 and Atu0528 are separated by 322 nucleotides Atu0528 and Atu0529 are separated by 154 nucleotides Atu0529 and Atu0530 are separated by 330 nucleotides
Atu0527: Atu0527 - two component sensor kinase/response regulator hybrid, at 517,707 to 521,216
Atu0527
Atu0528: Atu0528 - large conductance mechanosensitive channel protein, at 521,539 to 521,967
Atu0528
Atu0529: Atu0529 - aspartate transaminase, at 522,122 to 523,288
Atu0529
Atu0530: Atu0530 - UDP-galactose 4-epimerase, at 523,619 to 524,650
Atu0530
Position (kb) 522
523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 521.171 kb on - strand at 521.178 kb on + strand at 521.226 kb on - strand at 521.406 kb on + strand at 521.413 kb on - strand at 521.484 kb on + strand at 521.502 kb on + strand at 521.525 kb on - strand at 521.682 kb on - strand, within Atu0528 at 521.702 kb on + strand, within Atu0528 at 521.729 kb on + strand, within Atu0528 at 521.838 kb on + strand, within Atu0528 at 521.846 kb on - strand, within Atu0528 at 521.957 kb on + strand at 522.080 kb on - strand at 522.136 kb on - strand at 522.138 kb on + strand at 522.138 kb on + strand at 522.153 kb on + strand at 522.260 kb on - strand, within Atu0529 at 522.304 kb on + strand, within Atu0529 at 522.317 kb on - strand, within Atu0529 at 522.355 kb on + strand, within Atu0529 at 522.525 kb on + strand, within Atu0529 at 522.613 kb on + strand, within Atu0529 at 522.883 kb on - strand, within Atu0529 at 522.946 kb on + strand, within Atu0529 at 523.054 kb on + strand, within Atu0529 at 523.073 kb on - strand, within Atu0529 at 523.085 kb on + strand, within Atu0529 at 523.085 kb on + strand, within Atu0529 at 523.166 kb on - strand, within Atu0529 at 523.188 kb on + strand at 523.189 kb on - strand at 523.202 kb on - strand at 523.223 kb on - strand at 523.230 kb on + strand at 523.238 kb on - strand at 523.305 kb on - strand at 523.497 kb on - strand at 523.647 kb on + strand at 523.666 kb on + strand at 523.827 kb on + strand, within Atu0530 at 523.901 kb on + strand, within Atu0530 at 524.050 kb on + strand, within Atu0530 at 524.085 kb on - strand, within Atu0530 at 524.107 kb on - strand, within Atu0530 at 524.117 kb on - strand, within Atu0530 at 524.119 kb on + strand, within Atu0530 at 524.199 kb on - strand, within Atu0530 at 524.251 kb on + strand, within Atu0530
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 521,171 - -2.1 521,178 + -1.3 521,226 - +0.1 521,406 + -0.9 521,413 - -0.3 521,484 + +1.2 521,502 + +0.4 521,525 - -1.8 521,682 - Atu0528 0.33 +0.6 521,702 + Atu0528 0.38 +0.3 521,729 + Atu0528 0.44 +0.3 521,838 + Atu0528 0.70 +5.4 521,846 - Atu0528 0.72 -0.1 521,957 + +0.6 522,080 - +1.0 522,136 - -2.8 522,138 + +0.6 522,138 + +0.3 522,153 + -1.1 522,260 - Atu0529 0.12 -0.9 522,304 + Atu0529 0.16 -0.9 522,317 - Atu0529 0.17 +0.2 522,355 + Atu0529 0.20 -0.1 522,525 + Atu0529 0.35 -1.1 522,613 + Atu0529 0.42 +0.2 522,883 - Atu0529 0.65 -0.2 522,946 + Atu0529 0.71 -0.0 523,054 + Atu0529 0.80 +2.2 523,073 - Atu0529 0.81 -0.4 523,085 + Atu0529 0.83 -1.2 523,085 + Atu0529 0.83 +0.3 523,166 - Atu0529 0.89 -1.3 523,188 + +1.0 523,189 - +1.0 523,202 - -1.2 523,223 - -0.6 523,230 + -0.4 523,238 - +0.8 523,305 - +0.0 523,497 - -0.4 523,647 + -1.9 523,666 + +0.6 523,827 + Atu0530 0.20 +0.6 523,901 + Atu0530 0.27 -3.1 524,050 + Atu0530 0.42 +0.3 524,085 - Atu0530 0.45 +0.0 524,107 - Atu0530 0.47 -0.0 524,117 - Atu0530 0.48 +0.8 524,119 + Atu0530 0.48 -0.0 524,199 - Atu0530 0.56 -0.1 524,251 + Atu0530 0.61 -0.4
Or see this region's nucleotide sequence