Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0259 and Atu0260 are separated by 59 nucleotides Atu0260 and Atu0261 are separated by 116 nucleotides
Atu0259: Atu0259 - phenylalanyl-tRNA synthetase beta chain, at 255,544 to 257,967
Atu0259
Atu0260: Atu0260 - aldo-keto reductase, at 258,027 to 259,028
Atu0260
Atu0261: Atu0261 - transcriptional regulator, LysR family, at 259,145 to 260,035
Atu0261
Position (kb) 258
259
260 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 258.070 kb on + strand at 258.097 kb on + strand at 258.178 kb on + strand, within Atu0260 at 258.185 kb on + strand, within Atu0260 at 258.252 kb on + strand, within Atu0260 at 258.262 kb on + strand, within Atu0260 at 258.277 kb on + strand, within Atu0260 at 258.285 kb on - strand, within Atu0260 at 258.421 kb on - strand, within Atu0260 at 258.421 kb on - strand, within Atu0260 at 258.442 kb on + strand, within Atu0260 at 258.450 kb on - strand, within Atu0260 at 258.510 kb on + strand, within Atu0260 at 258.510 kb on + strand, within Atu0260 at 258.512 kb on + strand, within Atu0260 at 258.518 kb on - strand, within Atu0260 at 258.635 kb on + strand, within Atu0260 at 258.640 kb on + strand, within Atu0260 at 258.657 kb on - strand, within Atu0260 at 258.748 kb on - strand, within Atu0260 at 258.752 kb on - strand, within Atu0260 at 258.859 kb on + strand, within Atu0260 at 258.859 kb on + strand, within Atu0260 at 258.859 kb on + strand, within Atu0260 at 258.874 kb on - strand, within Atu0260 at 258.917 kb on - strand, within Atu0260 at 258.955 kb on - strand at 259.001 kb on + strand at 259.223 kb on + strand at 259.274 kb on - strand, within Atu0261 at 259.286 kb on - strand, within Atu0261 at 259.432 kb on + strand, within Atu0261 at 259.439 kb on + strand, within Atu0261 at 259.473 kb on + strand, within Atu0261 at 259.492 kb on + strand, within Atu0261 at 259.750 kb on - strand, within Atu0261 at 259.750 kb on - strand, within Atu0261 at 259.828 kb on - strand, within Atu0261 at 259.835 kb on - strand, within Atu0261 at 259.862 kb on - strand, within Atu0261 at 259.889 kb on + strand, within Atu0261 at 259.933 kb on - strand, within Atu0261 at 259.991 kb on - strand at 259.997 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 258,070 + -0.6 258,097 + +0.8 258,178 + Atu0260 0.15 +0.5 258,185 + Atu0260 0.16 +0.9 258,252 + Atu0260 0.22 -2.1 258,262 + Atu0260 0.23 +0.0 258,277 + Atu0260 0.25 +1.5 258,285 - Atu0260 0.26 +2.2 258,421 - Atu0260 0.39 +1.1 258,421 - Atu0260 0.39 -2.2 258,442 + Atu0260 0.41 +0.4 258,450 - Atu0260 0.42 +0.7 258,510 + Atu0260 0.48 -0.5 258,510 + Atu0260 0.48 -1.0 258,512 + Atu0260 0.48 -0.9 258,518 - Atu0260 0.49 +0.8 258,635 + Atu0260 0.61 +4.2 258,640 + Atu0260 0.61 +2.5 258,657 - Atu0260 0.63 +1.1 258,748 - Atu0260 0.72 -1.5 258,752 - Atu0260 0.72 +0.1 258,859 + Atu0260 0.83 -0.4 258,859 + Atu0260 0.83 -1.4 258,859 + Atu0260 0.83 -1.5 258,874 - Atu0260 0.85 -0.7 258,917 - Atu0260 0.89 -0.8 258,955 - -0.8 259,001 + +1.1 259,223 + -0.4 259,274 - Atu0261 0.14 -0.6 259,286 - Atu0261 0.16 -0.2 259,432 + Atu0261 0.32 +0.6 259,439 + Atu0261 0.33 -0.2 259,473 + Atu0261 0.37 +0.0 259,492 + Atu0261 0.39 +1.0 259,750 - Atu0261 0.68 +0.3 259,750 - Atu0261 0.68 +0.3 259,828 - Atu0261 0.77 -1.4 259,835 - Atu0261 0.77 -2.5 259,862 - Atu0261 0.80 +0.1 259,889 + Atu0261 0.84 +0.2 259,933 - Atu0261 0.88 -1.2 259,991 - -0.4 259,997 - -2.1
Or see this region's nucleotide sequence