Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3523 and Atu8188 are separated by 8 nucleotides Atu8188 and Atu3525 are separated by 52 nucleotides
Atu3523: Atu3523 - polysaccharide biosynthesis-like protein, at 572,347 to 573,762
Atu3523
Atu8188: Atu8188 - hypothetical protein, at 573,771 to 575,042
Atu8188
Atu3525: Atu3525 - hypothetical protein, at 575,095 to 575,757
Atu3525
Position (kb) 573
574
575
576 Strain fitness (log2 ratio) -2
-1
0
1
2 at 572.789 kb on + strand, within Atu3523 at 572.832 kb on + strand, within Atu3523 at 572.926 kb on + strand, within Atu3523 at 572.934 kb on - strand, within Atu3523 at 572.934 kb on - strand, within Atu3523 at 573.091 kb on + strand, within Atu3523 at 573.099 kb on - strand, within Atu3523 at 573.219 kb on - strand, within Atu3523 at 573.439 kb on - strand, within Atu3523 at 573.530 kb on - strand, within Atu3523 at 573.586 kb on + strand, within Atu3523 at 573.675 kb on - strand at 573.736 kb on + strand at 573.736 kb on + strand at 573.744 kb on - strand at 573.744 kb on - strand at 573.744 kb on - strand at 573.744 kb on - strand at 573.744 kb on - strand at 573.744 kb on - strand at 574.189 kb on - strand, within Atu8188 at 574.314 kb on - strand, within Atu8188 at 574.315 kb on - strand, within Atu8188 at 574.315 kb on - strand, within Atu8188 at 574.414 kb on + strand, within Atu8188 at 574.414 kb on + strand, within Atu8188 at 574.414 kb on - strand, within Atu8188 at 574.422 kb on - strand, within Atu8188 at 574.454 kb on - strand, within Atu8188 at 574.479 kb on + strand, within Atu8188 at 574.502 kb on + strand, within Atu8188 at 574.562 kb on - strand, within Atu8188 at 574.591 kb on - strand, within Atu8188 at 574.650 kb on + strand, within Atu8188 at 574.806 kb on + strand, within Atu8188 at 574.838 kb on + strand, within Atu8188 at 574.969 kb on - strand at 575.041 kb on + strand at 575.191 kb on - strand, within Atu3525 at 575.213 kb on + strand, within Atu3525 at 575.218 kb on + strand, within Atu3525 at 575.236 kb on - strand, within Atu3525 at 575.312 kb on + strand, within Atu3525 at 575.320 kb on - strand, within Atu3525 at 575.381 kb on + strand, within Atu3525 at 575.432 kb on - strand, within Atu3525 at 575.432 kb on - strand, within Atu3525 at 575.660 kb on + strand, within Atu3525 at 575.793 kb on + strand at 576.001 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 572,789 + Atu3523 0.31 +1.6 572,832 + Atu3523 0.34 -0.0 572,926 + Atu3523 0.41 +0.5 572,934 - Atu3523 0.41 -0.3 572,934 - Atu3523 0.41 +2.1 573,091 + Atu3523 0.53 -0.8 573,099 - Atu3523 0.53 +0.6 573,219 - Atu3523 0.62 -1.3 573,439 - Atu3523 0.77 -0.9 573,530 - Atu3523 0.84 -2.0 573,586 + Atu3523 0.88 +1.1 573,675 - -0.2 573,736 + +2.4 573,736 + -1.2 573,744 - +1.1 573,744 - +1.5 573,744 - +0.1 573,744 - -1.0 573,744 - +0.5 573,744 - -0.1 574,189 - Atu8188 0.33 -1.2 574,314 - Atu8188 0.43 +0.1 574,315 - Atu8188 0.43 -0.9 574,315 - Atu8188 0.43 +0.6 574,414 + Atu8188 0.51 -1.8 574,414 + Atu8188 0.51 -0.4 574,414 - Atu8188 0.51 +0.9 574,422 - Atu8188 0.51 -0.6 574,454 - Atu8188 0.54 +1.3 574,479 + Atu8188 0.56 +0.2 574,502 + Atu8188 0.57 +0.5 574,562 - Atu8188 0.62 +0.9 574,591 - Atu8188 0.64 +1.2 574,650 + Atu8188 0.69 +1.3 574,806 + Atu8188 0.81 -0.6 574,838 + Atu8188 0.84 +0.9 574,969 - -1.1 575,041 + +0.6 575,191 - Atu3525 0.14 +1.2 575,213 + Atu3525 0.18 -1.1 575,218 + Atu3525 0.19 +0.5 575,236 - Atu3525 0.21 -1.4 575,312 + Atu3525 0.33 +0.4 575,320 - Atu3525 0.34 +0.3 575,381 + Atu3525 0.43 +1.4 575,432 - Atu3525 0.51 +0.1 575,432 - Atu3525 0.51 -0.6 575,660 + Atu3525 0.85 -0.3 575,793 + -0.6 576,001 + +0.8
Or see this region's nucleotide sequence