Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3818 and Atu3819 overlap by 4 nucleotides Atu3819 and Atu3820 overlap by 4 nucleotides Atu3820 and Atu3821 are separated by 33 nucleotides
Atu3818: Atu3818 - ribose ABC transporter ATPase, at 914,315 to 915,814
Atu3818
Atu3819: Atu3819 - ribose ABC transporter permease, at 915,811 to 916,809
Atu3819
Atu3820: Atu3820 - ribose ABC transporter permease, at 916,806 to 917,771
Atu3820
Atu3821: Atu3821 - ribose ABC transporter substrate-binding protein, at 917,805 to 918,734
Atu3821
Position (kb) 916
917
918 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 915.840 kb on + strand at 916.024 kb on + strand, within Atu3819 at 916.132 kb on + strand, within Atu3819 at 916.140 kb on - strand, within Atu3819 at 916.208 kb on + strand, within Atu3819 at 916.406 kb on - strand, within Atu3819 at 916.406 kb on - strand, within Atu3819 at 916.426 kb on + strand, within Atu3819 at 916.458 kb on + strand, within Atu3819 at 916.466 kb on - strand, within Atu3819 at 916.490 kb on - strand, within Atu3819 at 916.537 kb on - strand, within Atu3819 at 916.542 kb on - strand, within Atu3819 at 916.544 kb on + strand, within Atu3819 at 916.567 kb on - strand, within Atu3819 at 916.572 kb on + strand, within Atu3819 at 916.671 kb on + strand, within Atu3819 at 916.705 kb on - strand, within Atu3819 at 916.760 kb on + strand at 916.820 kb on - strand at 916.837 kb on + strand at 916.848 kb on + strand at 916.886 kb on - strand at 916.902 kb on + strand at 916.919 kb on + strand, within Atu3820 at 916.920 kb on - strand, within Atu3820 at 916.984 kb on - strand, within Atu3820 at 917.254 kb on + strand, within Atu3820 at 917.262 kb on - strand, within Atu3820 at 917.293 kb on + strand, within Atu3820 at 917.300 kb on + strand, within Atu3820 at 917.300 kb on + strand, within Atu3820 at 917.492 kb on + strand, within Atu3820 at 917.560 kb on - strand, within Atu3820 at 917.605 kb on + strand, within Atu3820 at 917.610 kb on + strand, within Atu3820 at 917.610 kb on + strand, within Atu3820 at 917.618 kb on - strand, within Atu3820 at 917.643 kb on - strand, within Atu3820 at 917.645 kb on + strand, within Atu3820 at 917.653 kb on - strand, within Atu3820 at 917.663 kb on - strand, within Atu3820 at 917.673 kb on - strand, within Atu3820 at 917.694 kb on - strand at 917.716 kb on + strand at 917.716 kb on + strand at 917.753 kb on - strand at 917.764 kb on + strand at 917.841 kb on + strand at 917.867 kb on + strand at 917.867 kb on + strand at 917.867 kb on + strand at 917.875 kb on - strand at 917.877 kb on + strand at 917.916 kb on - strand, within Atu3821 at 917.959 kb on + strand, within Atu3821 at 917.967 kb on - strand, within Atu3821 at 918.014 kb on + strand, within Atu3821 at 918.082 kb on - strand, within Atu3821 at 918.098 kb on + strand, within Atu3821 at 918.106 kb on - strand, within Atu3821 at 918.153 kb on + strand, within Atu3821 at 918.246 kb on + strand, within Atu3821 at 918.413 kb on - strand, within Atu3821 at 918.441 kb on + strand, within Atu3821 at 918.465 kb on - strand, within Atu3821 at 918.578 kb on - strand, within Atu3821 at 918.596 kb on + strand, within Atu3821 at 918.642 kb on + strand at 918.642 kb on + strand at 918.642 kb on + strand at 918.669 kb on + strand at 918.754 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 915,840 + -2.0 916,024 + Atu3819 0.21 +1.2 916,132 + Atu3819 0.32 -0.2 916,140 - Atu3819 0.33 +3.6 916,208 + Atu3819 0.40 +0.5 916,406 - Atu3819 0.60 -2.1 916,406 - Atu3819 0.60 +0.2 916,426 + Atu3819 0.62 +1.3 916,458 + Atu3819 0.65 +0.1 916,466 - Atu3819 0.66 +1.8 916,490 - Atu3819 0.68 -0.9 916,537 - Atu3819 0.73 +1.1 916,542 - Atu3819 0.73 +0.5 916,544 + Atu3819 0.73 -2.9 916,567 - Atu3819 0.76 +3.4 916,572 + Atu3819 0.76 -0.3 916,671 + Atu3819 0.86 +2.0 916,705 - Atu3819 0.89 -0.5 916,760 + +1.3 916,820 - +1.1 916,837 + -0.4 916,848 + -1.9 916,886 - +0.4 916,902 + +1.1 916,919 + Atu3820 0.12 -2.8 916,920 - Atu3820 0.12 -0.2 916,984 - Atu3820 0.18 -0.3 917,254 + Atu3820 0.46 +0.3 917,262 - Atu3820 0.47 -0.4 917,293 + Atu3820 0.50 -1.8 917,300 + Atu3820 0.51 -0.2 917,300 + Atu3820 0.51 -0.4 917,492 + Atu3820 0.71 +1.0 917,560 - Atu3820 0.78 +1.9 917,605 + Atu3820 0.83 -0.2 917,610 + Atu3820 0.83 -1.7 917,610 + Atu3820 0.83 +0.3 917,618 - Atu3820 0.84 -0.1 917,643 - Atu3820 0.87 +0.5 917,645 + Atu3820 0.87 +2.2 917,653 - Atu3820 0.88 -0.5 917,663 - Atu3820 0.89 +0.8 917,673 - Atu3820 0.90 -0.4 917,694 - -1.1 917,716 + -1.7 917,716 + +0.0 917,753 - -2.3 917,764 + -0.3 917,841 + +0.7 917,867 + -1.5 917,867 + +0.8 917,867 + +1.0 917,875 - -0.1 917,877 + +1.6 917,916 - Atu3821 0.12 -1.3 917,959 + Atu3821 0.17 +0.7 917,967 - Atu3821 0.17 -1.5 918,014 + Atu3821 0.22 -1.4 918,082 - Atu3821 0.30 +0.9 918,098 + Atu3821 0.32 -0.3 918,106 - Atu3821 0.32 +0.4 918,153 + Atu3821 0.37 +2.8 918,246 + Atu3821 0.47 -1.6 918,413 - Atu3821 0.65 +0.5 918,441 + Atu3821 0.68 +0.5 918,465 - Atu3821 0.71 -1.2 918,578 - Atu3821 0.83 +1.6 918,596 + Atu3821 0.85 +0.7 918,642 + -1.4 918,642 + +1.0 918,642 + +0.3 918,669 + +0.2 918,754 + -0.9
Or see this region's nucleotide sequence