Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3585 and Atu3586 are separated by 103 nucleotides Atu3586 and Atu3587 are separated by 118 nucleotides
Atu3585: Atu3585 - glutathione S-transferase, at 640,322 to 641,218
Atu3585
Atu3586: Atu3586 - propionyl-CoA carboxylase, at 641,322 to 642,854
Atu3586
Atu3587: Atu3587 - transcriptional regulator, at 642,973 to 644,391
Atu3587
Position (kb) 641
642
643 Strain fitness (log2 ratio) -2
-1
0
1
2 at 640.426 kb on + strand, within Atu3585 at 640.518 kb on + strand, within Atu3585 at 640.583 kb on - strand, within Atu3585 at 640.583 kb on - strand, within Atu3585 at 640.698 kb on - strand, within Atu3585 at 640.755 kb on + strand, within Atu3585 at 640.866 kb on + strand, within Atu3585 at 640.874 kb on - strand, within Atu3585 at 641.016 kb on + strand, within Atu3585 at 641.095 kb on + strand, within Atu3585 at 641.103 kb on - strand, within Atu3585 at 641.121 kb on + strand, within Atu3585 at 641.139 kb on + strand at 641.156 kb on + strand at 641.165 kb on - strand at 641.320 kb on + strand at 641.338 kb on - strand at 641.365 kb on + strand at 641.533 kb on - strand, within Atu3586 at 641.611 kb on - strand, within Atu3586 at 641.711 kb on - strand, within Atu3586 at 641.752 kb on + strand, within Atu3586 at 641.752 kb on + strand, within Atu3586 at 641.799 kb on + strand, within Atu3586 at 641.814 kb on - strand, within Atu3586 at 641.975 kb on - strand, within Atu3586 at 642.214 kb on - strand, within Atu3586 at 642.215 kb on - strand, within Atu3586 at 642.215 kb on - strand, within Atu3586 at 642.274 kb on - strand, within Atu3586 at 642.285 kb on + strand, within Atu3586 at 642.331 kb on + strand, within Atu3586 at 642.339 kb on - strand, within Atu3586 at 642.412 kb on - strand, within Atu3586 at 642.507 kb on - strand, within Atu3586 at 642.507 kb on - strand, within Atu3586 at 642.519 kb on - strand, within Atu3586 at 642.635 kb on - strand, within Atu3586 at 642.640 kb on - strand, within Atu3586 at 642.651 kb on - strand, within Atu3586 at 642.707 kb on + strand at 642.742 kb on - strand at 642.763 kb on + strand at 642.788 kb on - strand at 642.930 kb on - strand at 643.015 kb on - strand at 643.059 kb on + strand at 643.087 kb on - strand at 643.152 kb on + strand, within Atu3587 at 643.167 kb on + strand, within Atu3587 at 643.315 kb on + strand, within Atu3587 at 643.348 kb on + strand, within Atu3587 at 643.371 kb on - strand, within Atu3587 at 643.459 kb on + strand, within Atu3587 at 643.552 kb on + strand, within Atu3587 at 643.627 kb on - strand, within Atu3587 at 643.696 kb on + strand, within Atu3587 at 643.702 kb on - strand, within Atu3587 at 643.708 kb on + strand, within Atu3587 at 643.786 kb on + strand, within Atu3587 at 643.792 kb on + strand, within Atu3587 at 643.795 kb on - strand, within Atu3587
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 640,426 + Atu3585 0.12 +1.2 640,518 + Atu3585 0.22 +0.8 640,583 - Atu3585 0.29 -0.3 640,583 - Atu3585 0.29 +1.2 640,698 - Atu3585 0.42 +1.0 640,755 + Atu3585 0.48 +0.1 640,866 + Atu3585 0.61 +1.2 640,874 - Atu3585 0.62 +0.5 641,016 + Atu3585 0.77 +0.1 641,095 + Atu3585 0.86 -1.5 641,103 - Atu3585 0.87 -1.5 641,121 + Atu3585 0.89 +1.2 641,139 + +0.0 641,156 + +0.8 641,165 - -0.4 641,320 + -0.3 641,338 - +1.2 641,365 + -0.3 641,533 - Atu3586 0.14 +0.1 641,611 - Atu3586 0.19 +1.9 641,711 - Atu3586 0.25 -2.3 641,752 + Atu3586 0.28 -0.0 641,752 + Atu3586 0.28 -0.1 641,799 + Atu3586 0.31 -2.5 641,814 - Atu3586 0.32 -0.6 641,975 - Atu3586 0.43 -0.7 642,214 - Atu3586 0.58 -1.2 642,215 - Atu3586 0.58 -1.9 642,215 - Atu3586 0.58 +1.3 642,274 - Atu3586 0.62 -0.3 642,285 + Atu3586 0.63 -0.3 642,331 + Atu3586 0.66 +1.9 642,339 - Atu3586 0.66 -0.4 642,412 - Atu3586 0.71 -0.4 642,507 - Atu3586 0.77 +1.7 642,507 - Atu3586 0.77 -0.4 642,519 - Atu3586 0.78 -0.3 642,635 - Atu3586 0.86 -1.4 642,640 - Atu3586 0.86 -1.7 642,651 - Atu3586 0.87 -0.9 642,707 + -0.3 642,742 - -0.9 642,763 + +1.4 642,788 - +0.1 642,930 - -0.6 643,015 - -0.0 643,059 + +0.6 643,087 - +0.9 643,152 + Atu3587 0.13 -0.1 643,167 + Atu3587 0.14 +0.8 643,315 + Atu3587 0.24 -1.1 643,348 + Atu3587 0.26 -0.0 643,371 - Atu3587 0.28 -1.2 643,459 + Atu3587 0.34 +0.9 643,552 + Atu3587 0.41 -0.9 643,627 - Atu3587 0.46 -0.3 643,696 + Atu3587 0.51 -0.4 643,702 - Atu3587 0.51 -2.1 643,708 + Atu3587 0.52 +2.3 643,786 + Atu3587 0.57 +0.3 643,792 + Atu3587 0.58 +1.0 643,795 - Atu3587 0.58 +0.5
Or see this region's nucleotide sequence