Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3578 and Atu3579 are separated by 167 nucleotides Atu3579 and Atu3580 are separated by 13 nucleotides
Atu3578: Atu3578 - glycerol-3-phosphate dehydrogenase, at 632,366 to 633,913
Atu3578
Atu3579: Atu3579 - lactoylglutathione lyase, at 634,081 to 634,497
Atu3579
Atu3580: Atu3580 - methylmalonyl-CoA mutase, at 634,511 to 636,652
Atu3580
Position (kb) 634
635 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 633.196 kb on - strand, within Atu3578 at 633.200 kb on - strand, within Atu3578 at 633.200 kb on - strand, within Atu3578 at 633.241 kb on - strand, within Atu3578 at 633.534 kb on - strand, within Atu3578 at 633.618 kb on + strand, within Atu3578 at 633.750 kb on + strand, within Atu3578 at 633.919 kb on - strand at 634.054 kb on + strand at 634.054 kb on + strand at 634.261 kb on + strand, within Atu3579 at 634.261 kb on + strand, within Atu3579 at 634.269 kb on - strand, within Atu3579 at 634.361 kb on + strand, within Atu3579 at 634.404 kb on - strand, within Atu3579 at 634.464 kb on + strand at 634.464 kb on + strand at 634.509 kb on - strand at 634.530 kb on + strand at 634.549 kb on + strand at 634.549 kb on - strand at 634.611 kb on + strand at 634.750 kb on + strand, within Atu3580 at 634.763 kb on - strand, within Atu3580 at 634.768 kb on - strand, within Atu3580 at 634.768 kb on - strand, within Atu3580 at 634.794 kb on + strand, within Atu3580 at 634.802 kb on - strand, within Atu3580 at 634.802 kb on - strand, within Atu3580 at 634.802 kb on - strand, within Atu3580 at 634.814 kb on - strand, within Atu3580 at 634.993 kb on + strand, within Atu3580 at 635.207 kb on + strand, within Atu3580 at 635.250 kb on + strand, within Atu3580 at 635.307 kb on + strand, within Atu3580 at 635.307 kb on + strand, within Atu3580 at 635.312 kb on + strand, within Atu3580 at 635.434 kb on - strand, within Atu3580 at 635.451 kb on - strand, within Atu3580
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 633,196 - Atu3578 0.54 +0.5 633,200 - Atu3578 0.54 -0.6 633,200 - Atu3578 0.54 +1.4 633,241 - Atu3578 0.57 +1.0 633,534 - Atu3578 0.75 +3.0 633,618 + Atu3578 0.81 +0.7 633,750 + Atu3578 0.89 +0.6 633,919 - +1.4 634,054 + +1.2 634,054 + -2.4 634,261 + Atu3579 0.43 -0.6 634,261 + Atu3579 0.43 -1.1 634,269 - Atu3579 0.45 -0.6 634,361 + Atu3579 0.67 -2.1 634,404 - Atu3579 0.77 +0.6 634,464 + -2.6 634,464 + -3.0 634,509 - -0.3 634,530 + -2.7 634,549 + +0.9 634,549 - -2.5 634,611 + +0.3 634,750 + Atu3580 0.11 -1.4 634,763 - Atu3580 0.12 -2.9 634,768 - Atu3580 0.12 -0.4 634,768 - Atu3580 0.12 -1.2 634,794 + Atu3580 0.13 -0.9 634,802 - Atu3580 0.14 -2.2 634,802 - Atu3580 0.14 -1.2 634,802 - Atu3580 0.14 -2.1 634,814 - Atu3580 0.14 -0.4 634,993 + Atu3580 0.23 +0.1 635,207 + Atu3580 0.32 -0.3 635,250 + Atu3580 0.35 -3.0 635,307 + Atu3580 0.37 -0.6 635,307 + Atu3580 0.37 -3.3 635,312 + Atu3580 0.37 -1.4 635,434 - Atu3580 0.43 -0.5 635,451 - Atu3580 0.44 -0.2
Or see this region's nucleotide sequence