Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3548 and Atu3549 overlap by 4 nucleotides Atu3549 and Atu3550 overlap by 8 nucleotides
Atu3548: Atu3548 - glycosyltransferase, at 597,762 to 598,988
Atu3548
Atu3549: Atu3549 - hypothetical protein, at 598,985 to 600,322
Atu3549
Atu3550: Atu3550 - succinoglycan transport protein, at 600,315 to 601,793
Atu3550
Position (kb) 598
599
600
601 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 598.077 kb on + strand, within Atu3548 at 598.085 kb on - strand, within Atu3548 at 598.166 kb on - strand, within Atu3548 at 598.345 kb on + strand, within Atu3548 at 598.413 kb on + strand, within Atu3548 at 598.420 kb on + strand, within Atu3548 at 598.487 kb on - strand, within Atu3548 at 598.494 kb on - strand, within Atu3548 at 598.548 kb on + strand, within Atu3548 at 598.616 kb on - strand, within Atu3548 at 598.675 kb on + strand, within Atu3548 at 598.695 kb on + strand, within Atu3548 at 598.752 kb on - strand, within Atu3548 at 598.774 kb on - strand, within Atu3548 at 598.824 kb on - strand, within Atu3548 at 598.883 kb on + strand at 598.895 kb on + strand at 598.904 kb on - strand at 598.904 kb on - strand at 599.122 kb on - strand, within Atu3549 at 599.175 kb on - strand, within Atu3549 at 599.323 kb on - strand, within Atu3549 at 599.323 kb on - strand, within Atu3549 at 599.328 kb on - strand, within Atu3549 at 599.333 kb on - strand, within Atu3549 at 599.357 kb on - strand, within Atu3549 at 599.358 kb on - strand, within Atu3549 at 599.358 kb on - strand, within Atu3549 at 599.368 kb on - strand, within Atu3549 at 599.375 kb on - strand, within Atu3549 at 599.386 kb on - strand, within Atu3549 at 599.535 kb on + strand, within Atu3549 at 599.535 kb on + strand, within Atu3549 at 599.535 kb on + strand, within Atu3549 at 599.535 kb on + strand, within Atu3549 at 599.543 kb on - strand, within Atu3549 at 599.543 kb on - strand, within Atu3549 at 599.557 kb on + strand, within Atu3549 at 599.557 kb on + strand, within Atu3549 at 599.565 kb on - strand, within Atu3549 at 599.584 kb on - strand, within Atu3549 at 599.609 kb on - strand, within Atu3549 at 599.609 kb on - strand, within Atu3549 at 599.609 kb on - strand, within Atu3549 at 599.609 kb on - strand, within Atu3549 at 599.734 kb on + strand, within Atu3549 at 599.751 kb on + strand, within Atu3549 at 599.751 kb on + strand, within Atu3549 at 599.759 kb on - strand, within Atu3549 at 599.759 kb on - strand, within Atu3549 at 599.781 kb on - strand, within Atu3549 at 599.888 kb on + strand, within Atu3549 at 599.931 kb on + strand, within Atu3549 at 599.990 kb on + strand, within Atu3549 at 600.013 kb on + strand, within Atu3549 at 600.030 kb on + strand, within Atu3549 at 600.368 kb on - strand at 600.426 kb on + strand at 600.526 kb on - strand, within Atu3550 at 600.615 kb on + strand, within Atu3550 at 600.696 kb on + strand, within Atu3550 at 600.696 kb on + strand, within Atu3550 at 600.730 kb on + strand, within Atu3550 at 600.784 kb on + strand, within Atu3550 at 600.823 kb on - strand, within Atu3550 at 600.850 kb on + strand, within Atu3550 at 600.887 kb on + strand, within Atu3550 at 600.900 kb on - strand, within Atu3550 at 600.900 kb on - strand, within Atu3550 at 600.943 kb on - strand, within Atu3550 at 600.956 kb on + strand, within Atu3550 at 600.969 kb on + strand, within Atu3550 at 600.990 kb on + strand, within Atu3550 at 601.053 kb on - strand, within Atu3550 at 601.079 kb on + strand, within Atu3550 at 601.128 kb on + strand, within Atu3550 at 601.142 kb on - strand, within Atu3550 at 601.166 kb on + strand, within Atu3550 at 601.174 kb on - strand, within Atu3550 at 601.194 kb on + strand, within Atu3550 at 601.195 kb on - strand, within Atu3550 at 601.222 kb on + strand, within Atu3550 at 601.269 kb on + strand, within Atu3550 at 601.277 kb on - strand, within Atu3550
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 598,077 + Atu3548 0.26 +1.0 598,085 - Atu3548 0.26 -0.1 598,166 - Atu3548 0.33 -2.2 598,345 + Atu3548 0.48 +1.4 598,413 + Atu3548 0.53 +1.4 598,420 + Atu3548 0.54 -0.7 598,487 - Atu3548 0.59 -1.1 598,494 - Atu3548 0.60 -0.7 598,548 + Atu3548 0.64 -1.2 598,616 - Atu3548 0.70 +0.6 598,675 + Atu3548 0.74 +0.9 598,695 + Atu3548 0.76 -1.5 598,752 - Atu3548 0.81 -1.0 598,774 - Atu3548 0.82 -1.5 598,824 - Atu3548 0.87 -0.5 598,883 + +1.1 598,895 + -0.8 598,904 - -1.7 598,904 - -1.4 599,122 - Atu3549 0.10 +0.0 599,175 - Atu3549 0.14 -2.4 599,323 - Atu3549 0.25 +0.1 599,323 - Atu3549 0.25 +0.5 599,328 - Atu3549 0.26 -0.6 599,333 - Atu3549 0.26 -0.4 599,357 - Atu3549 0.28 -0.4 599,358 - Atu3549 0.28 -0.6 599,358 - Atu3549 0.28 -1.8 599,368 - Atu3549 0.29 -0.1 599,375 - Atu3549 0.29 +1.2 599,386 - Atu3549 0.30 -0.6 599,535 + Atu3549 0.41 +0.5 599,535 + Atu3549 0.41 -1.1 599,535 + Atu3549 0.41 +2.7 599,535 + Atu3549 0.41 +0.2 599,543 - Atu3549 0.42 +1.0 599,543 - Atu3549 0.42 -1.1 599,557 + Atu3549 0.43 -1.4 599,557 + Atu3549 0.43 +0.1 599,565 - Atu3549 0.43 -0.8 599,584 - Atu3549 0.45 -1.1 599,609 - Atu3549 0.47 +1.0 599,609 - Atu3549 0.47 +0.7 599,609 - Atu3549 0.47 +0.4 599,609 - Atu3549 0.47 -0.4 599,734 + Atu3549 0.56 -0.1 599,751 + Atu3549 0.57 -0.6 599,751 + Atu3549 0.57 +0.8 599,759 - Atu3549 0.58 -0.1 599,759 - Atu3549 0.58 +0.8 599,781 - Atu3549 0.59 -1.1 599,888 + Atu3549 0.67 -2.3 599,931 + Atu3549 0.71 -0.9 599,990 + Atu3549 0.75 -0.8 600,013 + Atu3549 0.77 -0.8 600,030 + Atu3549 0.78 -0.1 600,368 - -2.2 600,426 + -0.7 600,526 - Atu3550 0.14 -1.1 600,615 + Atu3550 0.20 +1.0 600,696 + Atu3550 0.26 +1.9 600,696 + Atu3550 0.26 +0.8 600,730 + Atu3550 0.28 +0.2 600,784 + Atu3550 0.32 -0.1 600,823 - Atu3550 0.34 -1.9 600,850 + Atu3550 0.36 +0.1 600,887 + Atu3550 0.39 -1.4 600,900 - Atu3550 0.40 -0.9 600,900 - Atu3550 0.40 +1.9 600,943 - Atu3550 0.42 +0.3 600,956 + Atu3550 0.43 +0.6 600,969 + Atu3550 0.44 +0.8 600,990 + Atu3550 0.46 +0.3 601,053 - Atu3550 0.50 -0.6 601,079 + Atu3550 0.52 -1.6 601,128 + Atu3550 0.55 +0.9 601,142 - Atu3550 0.56 +0.3 601,166 + Atu3550 0.58 -0.3 601,174 - Atu3550 0.58 -3.3 601,194 + Atu3550 0.59 +1.3 601,195 - Atu3550 0.59 +0.7 601,222 + Atu3550 0.61 +0.4 601,269 + Atu3550 0.65 -1.3 601,277 - Atu3550 0.65 +0.2
Or see this region's nucleotide sequence