Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3487 and Atu3488 are separated by 226 nucleotides Atu3488 and Atu3489 are separated by 14 nucleotides
Atu3487: Atu3487 - sugar ABC transporter substrate-binding protein, at 537,407 to 538,417
Atu3487
Atu3488: Atu3488 - ABC transporter permease, at 538,644 to 540,176
Atu3488
Atu3489: Atu3489 - ABC transporter permease, at 540,191 to 541,192
Atu3489
Position (kb) 538
539
540
541 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 537.801 kb on + strand, within Atu3487 at 537.809 kb on - strand, within Atu3487 at 537.976 kb on - strand, within Atu3487 at 537.977 kb on - strand, within Atu3487 at 538.086 kb on - strand, within Atu3487 at 538.141 kb on - strand, within Atu3487 at 538.152 kb on + strand, within Atu3487 at 538.157 kb on + strand, within Atu3487 at 538.160 kb on - strand, within Atu3487 at 538.273 kb on + strand, within Atu3487 at 538.451 kb on - strand at 538.460 kb on - strand at 538.587 kb on + strand at 538.592 kb on + strand at 538.595 kb on - strand at 538.911 kb on - strand, within Atu3488 at 538.911 kb on - strand, within Atu3488 at 538.941 kb on + strand, within Atu3488 at 539.258 kb on + strand, within Atu3488 at 539.298 kb on - strand, within Atu3488 at 539.615 kb on + strand, within Atu3488 at 539.694 kb on - strand, within Atu3488 at 539.769 kb on - strand, within Atu3488 at 539.786 kb on - strand, within Atu3488 at 539.996 kb on - strand, within Atu3488 at 540.095 kb on - strand at 540.255 kb on + strand at 540.275 kb on + strand at 540.276 kb on + strand at 540.430 kb on - strand, within Atu3489 at 540.447 kb on + strand, within Atu3489 at 540.602 kb on + strand, within Atu3489 at 540.638 kb on + strand, within Atu3489 at 540.649 kb on - strand, within Atu3489 at 540.685 kb on + strand, within Atu3489 at 540.718 kb on - strand, within Atu3489 at 540.732 kb on + strand, within Atu3489 at 540.733 kb on - strand, within Atu3489 at 540.763 kb on - strand, within Atu3489 at 541.011 kb on + strand, within Atu3489 at 541.020 kb on - strand, within Atu3489 at 541.137 kb on + strand at 541.164 kb on - strand at 541.169 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 537,801 + Atu3487 0.39 +0.6 537,809 - Atu3487 0.40 +0.4 537,976 - Atu3487 0.56 -2.2 537,977 - Atu3487 0.56 +0.8 538,086 - Atu3487 0.67 +0.8 538,141 - Atu3487 0.73 -0.0 538,152 + Atu3487 0.74 -0.9 538,157 + Atu3487 0.74 +0.0 538,160 - Atu3487 0.74 -0.3 538,273 + Atu3487 0.86 +1.0 538,451 - +0.5 538,460 - +0.6 538,587 + -0.8 538,592 + -0.8 538,595 - -1.3 538,911 - Atu3488 0.17 +0.5 538,911 - Atu3488 0.17 +0.5 538,941 + Atu3488 0.19 -1.5 539,258 + Atu3488 0.40 -2.7 539,298 - Atu3488 0.43 -0.6 539,615 + Atu3488 0.63 -0.7 539,694 - Atu3488 0.68 -0.9 539,769 - Atu3488 0.73 -1.4 539,786 - Atu3488 0.74 +0.7 539,996 - Atu3488 0.88 +0.1 540,095 - -0.0 540,255 + -0.1 540,275 + +2.8 540,276 + -1.0 540,430 - Atu3489 0.24 -0.0 540,447 + Atu3489 0.26 +1.1 540,602 + Atu3489 0.41 +0.5 540,638 + Atu3489 0.45 +0.3 540,649 - Atu3489 0.46 -0.1 540,685 + Atu3489 0.49 -1.5 540,718 - Atu3489 0.53 -0.6 540,732 + Atu3489 0.54 +0.3 540,733 - Atu3489 0.54 -1.5 540,763 - Atu3489 0.57 +2.0 541,011 + Atu3489 0.82 -0.6 541,020 - Atu3489 0.83 +1.9 541,137 + +0.6 541,164 - +0.1 541,169 - -1.8
Or see this region's nucleotide sequence