Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3419 and Atu3420 are separated by 83 nucleotides Atu3420 and Atu3421 are separated by 23 nucleotides
Atu3419: Atu3419 - hippurate hydrolase, at 466,689 to 467,876
Atu3419
Atu3420: Atu3420 - monooxygenase, at 467,960 to 469,300
Atu3420
Atu3421: Atu3421 - hypothetical protein, at 469,324 to 470,325
Atu3421
Position (kb) 467
468
469
470 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 467.007 kb on - strand, within Atu3419 at 467.019 kb on - strand, within Atu3419 at 467.165 kb on + strand, within Atu3419 at 467.173 kb on - strand, within Atu3419 at 467.263 kb on + strand, within Atu3419 at 467.264 kb on - strand, within Atu3419 at 467.264 kb on - strand, within Atu3419 at 467.290 kb on - strand, within Atu3419 at 467.301 kb on + strand, within Atu3419 at 467.309 kb on - strand, within Atu3419 at 467.309 kb on - strand, within Atu3419 at 467.699 kb on + strand, within Atu3419 at 467.885 kb on + strand at 467.893 kb on - strand at 467.893 kb on - strand at 467.984 kb on + strand at 468.048 kb on - strand at 468.175 kb on - strand, within Atu3420 at 468.211 kb on - strand, within Atu3420 at 468.418 kb on + strand, within Atu3420 at 468.426 kb on + strand, within Atu3420 at 468.525 kb on + strand, within Atu3420 at 468.525 kb on + strand, within Atu3420 at 468.530 kb on + strand, within Atu3420 at 468.533 kb on - strand, within Atu3420 at 468.535 kb on + strand, within Atu3420 at 468.535 kb on + strand, within Atu3420 at 468.548 kb on + strand, within Atu3420 at 468.548 kb on + strand, within Atu3420 at 468.550 kb on + strand, within Atu3420 at 468.560 kb on + strand, within Atu3420 at 468.582 kb on - strand, within Atu3420 at 468.732 kb on + strand, within Atu3420 at 468.791 kb on + strand, within Atu3420 at 468.843 kb on - strand, within Atu3420 at 468.866 kb on - strand, within Atu3420 at 469.010 kb on + strand, within Atu3420 at 469.010 kb on + strand, within Atu3420 at 469.029 kb on + strand, within Atu3420 at 469.247 kb on - strand at 469.375 kb on + strand at 469.385 kb on + strand at 469.490 kb on + strand, within Atu3421 at 469.498 kb on - strand, within Atu3421 at 469.498 kb on - strand, within Atu3421 at 469.598 kb on - strand, within Atu3421 at 469.613 kb on + strand, within Atu3421 at 469.782 kb on + strand, within Atu3421 at 469.870 kb on + strand, within Atu3421 at 470.076 kb on - strand, within Atu3421 at 470.109 kb on - strand, within Atu3421 at 470.126 kb on + strand, within Atu3421
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 467,007 - Atu3419 0.27 -0.9 467,019 - Atu3419 0.28 -0.5 467,165 + Atu3419 0.40 -0.8 467,173 - Atu3419 0.41 -0.2 467,263 + Atu3419 0.48 +0.2 467,264 - Atu3419 0.48 -0.9 467,264 - Atu3419 0.48 +0.5 467,290 - Atu3419 0.51 +2.7 467,301 + Atu3419 0.52 +2.2 467,309 - Atu3419 0.52 -0.5 467,309 - Atu3419 0.52 -0.5 467,699 + Atu3419 0.85 +3.0 467,885 + +0.7 467,893 - +0.3 467,893 - -0.7 467,984 + +0.6 468,048 - -0.3 468,175 - Atu3420 0.16 -2.6 468,211 - Atu3420 0.19 +0.3 468,418 + Atu3420 0.34 -1.8 468,426 + Atu3420 0.35 -2.6 468,525 + Atu3420 0.42 -1.0 468,525 + Atu3420 0.42 -1.5 468,530 + Atu3420 0.43 +0.4 468,533 - Atu3420 0.43 -0.7 468,535 + Atu3420 0.43 +1.4 468,535 + Atu3420 0.43 -0.4 468,548 + Atu3420 0.44 +1.8 468,548 + Atu3420 0.44 -2.5 468,550 + Atu3420 0.44 -1.8 468,560 + Atu3420 0.45 +0.8 468,582 - Atu3420 0.46 +0.8 468,732 + Atu3420 0.58 +0.4 468,791 + Atu3420 0.62 -0.0 468,843 - Atu3420 0.66 -1.3 468,866 - Atu3420 0.68 -0.2 469,010 + Atu3420 0.78 -1.7 469,010 + Atu3420 0.78 -1.8 469,029 + Atu3420 0.80 -0.6 469,247 - -1.9 469,375 + -0.5 469,385 + -0.1 469,490 + Atu3421 0.17 +0.0 469,498 - Atu3421 0.17 -0.6 469,498 - Atu3421 0.17 +0.2 469,598 - Atu3421 0.27 +0.5 469,613 + Atu3421 0.29 +0.8 469,782 + Atu3421 0.46 -0.0 469,870 + Atu3421 0.54 +2.8 470,076 - Atu3421 0.75 +0.1 470,109 - Atu3421 0.78 -0.7 470,126 + Atu3421 0.80 -0.2
Or see this region's nucleotide sequence