Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3223 and Atu3224 overlap by 4 nucleotides Atu3224 and Atu3225 overlap by 4 nucleotides Atu3225 and Atu3226 are separated by 17 nucleotides
Atu3223: Atu3223 - ribose ABC transporter ATPase, at 236,874 to 238,397
Atu3223
Atu3224: Atu3224 - ribose ABC transporter permease, at 238,394 to 239,440
Atu3224
Atu3225: Atu3225 - ABC transporter permease, at 239,437 to 240,417
Atu3225
Atu3226: Atu3226 - GntR family transcriptional regulator, at 240,435 to 241,169
Atu3226
Position (kb) 238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 237.419 kb on + strand, within Atu3223 at 237.488 kb on + strand, within Atu3223 at 237.496 kb on - strand, within Atu3223 at 237.509 kb on + strand, within Atu3223 at 237.521 kb on + strand, within Atu3223 at 237.563 kb on + strand, within Atu3223 at 237.568 kb on + strand, within Atu3223 at 237.570 kb on + strand, within Atu3223 at 237.571 kb on - strand, within Atu3223 at 237.578 kb on - strand, within Atu3223 at 237.603 kb on + strand, within Atu3223 at 237.686 kb on - strand, within Atu3223 at 237.692 kb on + strand, within Atu3223 at 237.714 kb on - strand, within Atu3223 at 237.799 kb on - strand, within Atu3223 at 237.821 kb on + strand, within Atu3223 at 237.829 kb on - strand, within Atu3223 at 237.892 kb on + strand, within Atu3223 at 237.900 kb on - strand, within Atu3223 at 237.900 kb on - strand, within Atu3223 at 237.960 kb on + strand, within Atu3223 at 237.968 kb on - strand, within Atu3223 at 237.968 kb on - strand, within Atu3223 at 237.977 kb on - strand, within Atu3223 at 238.134 kb on - strand, within Atu3223 at 238.222 kb on - strand, within Atu3223 at 238.263 kb on + strand at 238.338 kb on - strand at 238.433 kb on + strand at 238.567 kb on + strand, within Atu3224 at 238.779 kb on + strand, within Atu3224 at 238.790 kb on + strand, within Atu3224 at 238.817 kb on + strand, within Atu3224 at 238.817 kb on + strand, within Atu3224 at 238.843 kb on - strand, within Atu3224 at 238.844 kb on - strand, within Atu3224 at 238.936 kb on + strand, within Atu3224 at 238.952 kb on - strand, within Atu3224 at 238.954 kb on - strand, within Atu3224 at 238.964 kb on - strand, within Atu3224 at 239.044 kb on + strand, within Atu3224 at 239.088 kb on + strand, within Atu3224 at 239.100 kb on - strand, within Atu3224 at 239.133 kb on - strand, within Atu3224 at 239.194 kb on - strand, within Atu3224 at 239.229 kb on - strand, within Atu3224 at 239.246 kb on - strand, within Atu3224 at 239.307 kb on - strand, within Atu3224 at 239.333 kb on - strand, within Atu3224 at 239.368 kb on + strand at 239.492 kb on + strand at 239.502 kb on - strand at 239.631 kb on - strand, within Atu3225 at 239.641 kb on + strand, within Atu3225 at 239.649 kb on - strand, within Atu3225 at 239.649 kb on - strand, within Atu3225 at 239.660 kb on - strand, within Atu3225 at 239.701 kb on + strand, within Atu3225 at 239.709 kb on - strand, within Atu3225 at 239.833 kb on - strand, within Atu3225 at 239.915 kb on + strand, within Atu3225 at 239.929 kb on - strand, within Atu3225 at 240.127 kb on + strand, within Atu3225 at 240.127 kb on + strand, within Atu3225 at 240.134 kb on - strand, within Atu3225 at 240.135 kb on - strand, within Atu3225 at 240.135 kb on - strand, within Atu3225 at 240.279 kb on - strand, within Atu3225 at 240.301 kb on + strand, within Atu3225 at 240.363 kb on - strand at 240.404 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 237,419 + Atu3223 0.36 +0.5 237,488 + Atu3223 0.40 +1.1 237,496 - Atu3223 0.41 +1.6 237,509 + Atu3223 0.42 -0.8 237,521 + Atu3223 0.42 +1.5 237,563 + Atu3223 0.45 +0.2 237,568 + Atu3223 0.46 +0.5 237,570 + Atu3223 0.46 +0.2 237,571 - Atu3223 0.46 +0.6 237,578 - Atu3223 0.46 -0.4 237,603 + Atu3223 0.48 +0.1 237,686 - Atu3223 0.53 -1.4 237,692 + Atu3223 0.54 +0.9 237,714 - Atu3223 0.55 -0.4 237,799 - Atu3223 0.61 +0.0 237,821 + Atu3223 0.62 -3.2 237,829 - Atu3223 0.63 +0.4 237,892 + Atu3223 0.67 +3.0 237,900 - Atu3223 0.67 +1.2 237,900 - Atu3223 0.67 +0.7 237,960 + Atu3223 0.71 -1.5 237,968 - Atu3223 0.72 -0.0 237,968 - Atu3223 0.72 -1.2 237,977 - Atu3223 0.72 +2.1 238,134 - Atu3223 0.83 +0.6 238,222 - Atu3223 0.88 +0.1 238,263 + +1.5 238,338 - -3.2 238,433 + -2.0 238,567 + Atu3224 0.17 +1.0 238,779 + Atu3224 0.37 -1.3 238,790 + Atu3224 0.38 +0.0 238,817 + Atu3224 0.40 +1.1 238,817 + Atu3224 0.40 -1.8 238,843 - Atu3224 0.43 +0.1 238,844 - Atu3224 0.43 -1.5 238,936 + Atu3224 0.52 -3.0 238,952 - Atu3224 0.53 +1.2 238,954 - Atu3224 0.53 -0.3 238,964 - Atu3224 0.54 +0.6 239,044 + Atu3224 0.62 +0.1 239,088 + Atu3224 0.66 +2.0 239,100 - Atu3224 0.67 -0.7 239,133 - Atu3224 0.71 +1.8 239,194 - Atu3224 0.76 -0.5 239,229 - Atu3224 0.80 -0.0 239,246 - Atu3224 0.81 +0.1 239,307 - Atu3224 0.87 +0.6 239,333 - Atu3224 0.90 +0.4 239,368 + +0.5 239,492 + -0.7 239,502 - +0.1 239,631 - Atu3225 0.20 +0.0 239,641 + Atu3225 0.21 +0.7 239,649 - Atu3225 0.22 -1.5 239,649 - Atu3225 0.22 +1.1 239,660 - Atu3225 0.23 +1.1 239,701 + Atu3225 0.27 +0.3 239,709 - Atu3225 0.28 +3.0 239,833 - Atu3225 0.40 +0.7 239,915 + Atu3225 0.49 +0.4 239,929 - Atu3225 0.50 +0.5 240,127 + Atu3225 0.70 -1.4 240,127 + Atu3225 0.70 +0.2 240,134 - Atu3225 0.71 -0.6 240,135 - Atu3225 0.71 +3.9 240,135 - Atu3225 0.71 +0.2 240,279 - Atu3225 0.86 -1.7 240,301 + Atu3225 0.88 +1.0 240,363 - -2.6 240,404 - +0.8
Or see this region's nucleotide sequence