Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0888 and Atu0889 are separated by 31 nucleotides Atu0889 and Atu0890 are separated by 92 nucleotides Atu0890 and Atu0891 are separated by 78 nucleotides Atu0891 and Atu0892 are separated by 10 nucleotides Atu0892 and Atu0893 are separated by 392 nucleotides
Atu0888: Atu0888 - transcriptional regulator, MerR family, at 880,625 to 881,038
Atu0888
Atu0889: Atu0889 - hypothetical protein, at 881,070 to 881,483
Atu0889
Atu0890: Atu0890 - hypothetical protein, at 881,576 to 881,848
Atu0890
Atu0891: Atu0891 - cation efflux system protein, at 881,927 to 882,934
Atu0891
Atu0892: Atu0892 - hypothetical protein, at 882,945 to 883,232
Atu0892
Atu0893: Atu0893 - ABC transporter, nucleotide binding/ATPase protein, at 883,625 to 884,722
Atu0893
Position (kb) 881
882
883 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 880.986 kb on + strand, within Atu0888 at 881.132 kb on - strand, within Atu0889 at 881.137 kb on - strand, within Atu0889 at 881.191 kb on + strand, within Atu0889 at 881.221 kb on - strand, within Atu0889 at 881.245 kb on - strand, within Atu0889 at 881.355 kb on + strand, within Atu0889 at 881.373 kb on - strand, within Atu0889 at 881.385 kb on + strand, within Atu0889 at 881.416 kb on - strand, within Atu0889 at 881.458 kb on + strand at 881.510 kb on - strand at 881.646 kb on - strand, within Atu0890 at 881.646 kb on - strand, within Atu0890 at 881.656 kb on - strand, within Atu0890 at 881.667 kb on + strand, within Atu0890 at 881.753 kb on + strand, within Atu0890 at 881.805 kb on + strand, within Atu0890 at 881.813 kb on - strand, within Atu0890 at 881.933 kb on - strand at 881.945 kb on - strand at 881.945 kb on - strand at 882.110 kb on + strand, within Atu0891 at 882.134 kb on - strand, within Atu0891 at 882.224 kb on + strand, within Atu0891 at 882.300 kb on - strand, within Atu0891 at 882.312 kb on + strand, within Atu0891 at 882.323 kb on + strand, within Atu0891 at 882.334 kb on - strand, within Atu0891 at 882.361 kb on + strand, within Atu0891 at 882.369 kb on - strand, within Atu0891 at 882.369 kb on - strand, within Atu0891 at 882.407 kb on - strand, within Atu0891 at 882.417 kb on + strand, within Atu0891 at 882.498 kb on - strand, within Atu0891 at 882.511 kb on + strand, within Atu0891 at 882.511 kb on + strand, within Atu0891 at 882.663 kb on + strand, within Atu0891 at 882.708 kb on - strand, within Atu0891 at 882.761 kb on + strand, within Atu0891 at 882.782 kb on - strand, within Atu0891 at 882.884 kb on + strand at 882.916 kb on - strand at 882.981 kb on + strand, within Atu0892 at 883.002 kb on + strand, within Atu0892 at 883.060 kb on + strand, within Atu0892 at 883.060 kb on + strand, within Atu0892 at 883.152 kb on + strand, within Atu0892 at 883.273 kb on + strand at 883.398 kb on + strand at 883.414 kb on + strand at 883.422 kb on - strand at 883.432 kb on - strand at 883.434 kb on + strand at 883.471 kb on - strand at 883.481 kb on + strand at 883.505 kb on + strand at 883.513 kb on - strand at 883.531 kb on - strand at 883.713 kb on - strand at 883.718 kb on - strand at 883.819 kb on - strand, within Atu0893 at 883.845 kb on + strand, within Atu0893 at 883.853 kb on - strand, within Atu0893
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 880,986 + Atu0888 0.87 -1.2 881,132 - Atu0889 0.15 +0.6 881,137 - Atu0889 0.16 -0.9 881,191 + Atu0889 0.29 +0.2 881,221 - Atu0889 0.36 +0.4 881,245 - Atu0889 0.42 -2.3 881,355 + Atu0889 0.69 -0.3 881,373 - Atu0889 0.73 +0.3 881,385 + Atu0889 0.76 -0.3 881,416 - Atu0889 0.84 -2.0 881,458 + -2.0 881,510 - +3.6 881,646 - Atu0890 0.26 +2.7 881,646 - Atu0890 0.26 +1.4 881,656 - Atu0890 0.29 +0.6 881,667 + Atu0890 0.33 +1.0 881,753 + Atu0890 0.65 +2.0 881,805 + Atu0890 0.84 +1.8 881,813 - Atu0890 0.87 +0.5 881,933 - +0.2 881,945 - +0.1 881,945 - -0.3 882,110 + Atu0891 0.18 +1.5 882,134 - Atu0891 0.21 -0.0 882,224 + Atu0891 0.29 +0.3 882,300 - Atu0891 0.37 +0.6 882,312 + Atu0891 0.38 -0.4 882,323 + Atu0891 0.39 -0.2 882,334 - Atu0891 0.40 +0.0 882,361 + Atu0891 0.43 -0.0 882,369 - Atu0891 0.44 -0.7 882,369 - Atu0891 0.44 +2.7 882,407 - Atu0891 0.48 +1.9 882,417 + Atu0891 0.49 +0.9 882,498 - Atu0891 0.57 -1.9 882,511 + Atu0891 0.58 -3.8 882,511 + Atu0891 0.58 +1.7 882,663 + Atu0891 0.73 -1.5 882,708 - Atu0891 0.77 +0.7 882,761 + Atu0891 0.83 +0.8 882,782 - Atu0891 0.85 -0.2 882,884 + -0.2 882,916 - +0.6 882,981 + Atu0892 0.12 +1.1 883,002 + Atu0892 0.20 -0.8 883,060 + Atu0892 0.40 +0.7 883,060 + Atu0892 0.40 +0.2 883,152 + Atu0892 0.72 -0.0 883,273 + +0.8 883,398 + -0.9 883,414 + -1.2 883,422 - -0.9 883,432 - -2.5 883,434 + +0.0 883,471 - +0.4 883,481 + +1.4 883,505 + +3.1 883,513 - +0.5 883,531 - -1.8 883,713 - +0.1 883,718 - -0.3 883,819 - Atu0893 0.18 +0.8 883,845 + Atu0893 0.20 +2.8 883,853 - Atu0893 0.21 +1.4
Or see this region's nucleotide sequence