Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0820 and Atu0821 are separated by 196 nucleotides Atu0821 and Atu0822 overlap by 8 nucleotides Atu0822 and Atu0823 are separated by 11 nucleotides
Atu0820: Atu0820 - ABC transporter, substrate binding protein (sulfate), at 818,166 to 819,191
Atu0820
Atu0821: Atu0821 - ABC transporter, membrane spanning protein, at 819,388 to 820,245
Atu0821
Atu0822: Atu0822 - ABC transporter, membrane spanning protein, at 820,238 to 821,110
Atu0822
Atu0823: Atu0823 - ABC transporter, nucleotide binding/ATPase protein, at 821,122 to 822,162
Atu0823
Position (kb) 819
820
821 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 818.407 kb on + strand, within Atu0820 at 818.486 kb on + strand, within Atu0820 at 818.560 kb on + strand, within Atu0820 at 818.569 kb on - strand, within Atu0820 at 818.569 kb on - strand, within Atu0820 at 818.569 kb on - strand, within Atu0820 at 818.625 kb on - strand, within Atu0820 at 818.658 kb on - strand, within Atu0820 at 818.664 kb on + strand, within Atu0820 at 818.668 kb on + strand, within Atu0820 at 818.687 kb on + strand, within Atu0820 at 818.687 kb on + strand, within Atu0820 at 818.687 kb on + strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.708 kb on + strand, within Atu0820 at 818.714 kb on + strand, within Atu0820 at 818.716 kb on - strand, within Atu0820 at 818.716 kb on - strand, within Atu0820 at 818.740 kb on - strand, within Atu0820 at 818.782 kb on + strand, within Atu0820 at 818.792 kb on + strand, within Atu0820 at 818.792 kb on + strand, within Atu0820 at 818.800 kb on - strand, within Atu0820 at 818.930 kb on - strand, within Atu0820 at 818.979 kb on - strand, within Atu0820 at 818.997 kb on + strand, within Atu0820 at 818.997 kb on + strand, within Atu0820 at 819.020 kb on + strand, within Atu0820 at 819.022 kb on + strand, within Atu0820 at 819.037 kb on + strand, within Atu0820 at 819.122 kb on + strand at 819.130 kb on - strand at 819.459 kb on - strand at 819.502 kb on - strand, within Atu0821 at 819.534 kb on + strand, within Atu0821 at 819.578 kb on + strand, within Atu0821 at 819.737 kb on - strand, within Atu0821 at 819.746 kb on + strand, within Atu0821 at 819.746 kb on + strand, within Atu0821 at 819.746 kb on + strand, within Atu0821 at 819.746 kb on + strand, within Atu0821 at 819.754 kb on - strand, within Atu0821 at 819.763 kb on + strand, within Atu0821 at 819.770 kb on - strand, within Atu0821 at 819.821 kb on + strand, within Atu0821 at 819.829 kb on - strand, within Atu0821 at 819.918 kb on + strand, within Atu0821 at 819.968 kb on + strand, within Atu0821 at 819.984 kb on - strand, within Atu0821 at 819.994 kb on + strand, within Atu0821 at 820.054 kb on + strand, within Atu0821 at 820.062 kb on - strand, within Atu0821 at 820.101 kb on + strand, within Atu0821 at 820.221 kb on - strand at 820.297 kb on - strand at 820.436 kb on - strand, within Atu0822 at 820.550 kb on + strand, within Atu0822 at 820.553 kb on + strand, within Atu0822 at 820.627 kb on - strand, within Atu0822 at 820.650 kb on - strand, within Atu0822 at 820.650 kb on - strand, within Atu0822 at 820.654 kb on + strand, within Atu0822 at 820.750 kb on - strand, within Atu0822 at 820.766 kb on - strand, within Atu0822 at 820.830 kb on + strand, within Atu0822 at 820.835 kb on - strand, within Atu0822 at 820.861 kb on + strand, within Atu0822 at 820.861 kb on + strand, within Atu0822 at 820.871 kb on + strand, within Atu0822 at 820.879 kb on - strand, within Atu0822 at 820.928 kb on + strand, within Atu0822 at 821.011 kb on - strand, within Atu0822 at 821.175 kb on + strand at 821.220 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 818,407 + Atu0820 0.23 +1.4 818,486 + Atu0820 0.31 +0.4 818,560 + Atu0820 0.38 -2.9 818,569 - Atu0820 0.39 +0.2 818,569 - Atu0820 0.39 -0.2 818,569 - Atu0820 0.39 -1.0 818,625 - Atu0820 0.45 -0.2 818,658 - Atu0820 0.48 +2.0 818,664 + Atu0820 0.49 +0.3 818,668 + Atu0820 0.49 -2.0 818,687 + Atu0820 0.51 -0.4 818,687 + Atu0820 0.51 +1.0 818,687 + Atu0820 0.51 -0.8 818,695 - Atu0820 0.52 +0.6 818,695 - Atu0820 0.52 +3.8 818,695 - Atu0820 0.52 -1.2 818,695 - Atu0820 0.52 +0.1 818,708 + Atu0820 0.53 -0.6 818,714 + Atu0820 0.53 +0.3 818,716 - Atu0820 0.54 -0.4 818,716 - Atu0820 0.54 -1.2 818,740 - Atu0820 0.56 +1.5 818,782 + Atu0820 0.60 -0.1 818,792 + Atu0820 0.61 +1.3 818,792 + Atu0820 0.61 -0.1 818,800 - Atu0820 0.62 -0.2 818,930 - Atu0820 0.74 +0.6 818,979 - Atu0820 0.79 -0.6 818,997 + Atu0820 0.81 -0.1 818,997 + Atu0820 0.81 +0.8 819,020 + Atu0820 0.83 +1.4 819,022 + Atu0820 0.83 +1.1 819,037 + Atu0820 0.85 +1.9 819,122 + +0.2 819,130 - -0.8 819,459 - +0.0 819,502 - Atu0821 0.13 +1.0 819,534 + Atu0821 0.17 +1.2 819,578 + Atu0821 0.22 -2.2 819,737 - Atu0821 0.41 +0.3 819,746 + Atu0821 0.42 +1.2 819,746 + Atu0821 0.42 -1.9 819,746 + Atu0821 0.42 -2.3 819,746 + Atu0821 0.42 -0.5 819,754 - Atu0821 0.43 -0.1 819,763 + Atu0821 0.44 -1.7 819,770 - Atu0821 0.45 -0.2 819,821 + Atu0821 0.50 -1.2 819,829 - Atu0821 0.51 -2.3 819,918 + Atu0821 0.62 +0.7 819,968 + Atu0821 0.68 +1.8 819,984 - Atu0821 0.69 +2.0 819,994 + Atu0821 0.71 -1.4 820,054 + Atu0821 0.78 -0.7 820,062 - Atu0821 0.79 +0.9 820,101 + Atu0821 0.83 -1.1 820,221 - +0.7 820,297 - -0.9 820,436 - Atu0822 0.23 +0.3 820,550 + Atu0822 0.36 -2.5 820,553 + Atu0822 0.36 +2.1 820,627 - Atu0822 0.45 -3.1 820,650 - Atu0822 0.47 +0.2 820,650 - Atu0822 0.47 +0.8 820,654 + Atu0822 0.48 -2.2 820,750 - Atu0822 0.59 -1.1 820,766 - Atu0822 0.60 -0.1 820,830 + Atu0822 0.68 +1.9 820,835 - Atu0822 0.68 +0.6 820,861 + Atu0822 0.71 -0.1 820,861 + Atu0822 0.71 -1.9 820,871 + Atu0822 0.73 +0.5 820,879 - Atu0822 0.73 +0.7 820,928 + Atu0822 0.79 -2.6 821,011 - Atu0822 0.89 -2.7 821,175 + -1.0 821,220 + +1.1
Or see this region's nucleotide sequence