Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0816 and Atu0817 overlap by 1 nucleotides Atu0817 and Atu0818 are separated by 28 nucleotides Atu0818 and Atu0819 are separated by 225 nucleotides Atu0819 and Atu0820 are separated by 245 nucleotides
Atu0816: Atu0816 - sulfate adenylate transferase, subunit 1, at 814,027 to 815,511
Atu0816
Atu0817: Atu0817 - sulfate adenylate transferase, subunit 2, at 815,511 to 816,464
Atu0817
Atu0818: Atu0818 - phosphoadenosine phosphosulfate reductase, at 816,493 to 817,254
Atu0818
Atu0819: Atu0819 - hypothetical protein, at 817,480 to 817,920
Atu0819
Atu0820: Atu0820 - ABC transporter, substrate binding protein (sulfate), at 818,166 to 819,191
Atu0820
Position (kb) 816
817
818 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 815.627 kb on + strand, within Atu0817 at 815.768 kb on + strand, within Atu0817 at 815.770 kb on + strand, within Atu0817 at 815.770 kb on + strand, within Atu0817 at 815.788 kb on + strand, within Atu0817 at 815.788 kb on + strand, within Atu0817 at 815.921 kb on + strand, within Atu0817 at 815.922 kb on - strand, within Atu0817 at 815.979 kb on - strand, within Atu0817 at 815.979 kb on - strand, within Atu0817 at 815.984 kb on - strand, within Atu0817 at 816.002 kb on - strand, within Atu0817 at 816.041 kb on + strand, within Atu0817 at 816.068 kb on + strand, within Atu0817 at 816.087 kb on + strand, within Atu0817 at 816.143 kb on + strand, within Atu0817 at 816.144 kb on - strand, within Atu0817 at 816.144 kb on - strand, within Atu0817 at 816.316 kb on + strand, within Atu0817 at 816.324 kb on - strand, within Atu0817 at 816.427 kb on + strand at 816.432 kb on - strand at 816.444 kb on + strand at 816.454 kb on + strand at 816.462 kb on - strand at 816.462 kb on - strand at 816.462 kb on - strand at 816.591 kb on - strand, within Atu0818 at 816.633 kb on + strand, within Atu0818 at 816.709 kb on + strand, within Atu0818 at 816.712 kb on - strand, within Atu0818 at 816.712 kb on - strand, within Atu0818 at 816.717 kb on - strand, within Atu0818 at 816.752 kb on + strand, within Atu0818 at 816.752 kb on + strand, within Atu0818 at 816.764 kb on + strand, within Atu0818 at 816.764 kb on + strand, within Atu0818 at 816.842 kb on - strand, within Atu0818 at 816.844 kb on + strand, within Atu0818 at 816.852 kb on - strand, within Atu0818 at 816.852 kb on - strand, within Atu0818 at 816.870 kb on + strand, within Atu0818 at 816.912 kb on + strand, within Atu0818 at 816.926 kb on + strand, within Atu0818 at 817.108 kb on - strand, within Atu0818 at 817.132 kb on + strand, within Atu0818 at 817.132 kb on + strand, within Atu0818 at 817.140 kb on - strand, within Atu0818 at 817.185 kb on + strand at 817.200 kb on + strand at 817.203 kb on - strand at 817.287 kb on + strand at 817.340 kb on - strand at 817.535 kb on - strand, within Atu0819 at 817.701 kb on - strand, within Atu0819 at 817.711 kb on + strand, within Atu0819 at 817.711 kb on + strand, within Atu0819 at 817.763 kb on + strand, within Atu0819 at 817.773 kb on + strand, within Atu0819 at 817.791 kb on - strand, within Atu0819 at 817.835 kb on - strand, within Atu0819 at 817.999 kb on - strand at 818.001 kb on + strand at 818.016 kb on - strand at 818.016 kb on - strand at 818.161 kb on - strand at 818.206 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 815,627 + Atu0817 0.12 -1.7 815,768 + Atu0817 0.27 -0.1 815,770 + Atu0817 0.27 +0.8 815,770 + Atu0817 0.27 +1.6 815,788 + Atu0817 0.29 +1.2 815,788 + Atu0817 0.29 -1.5 815,921 + Atu0817 0.43 +1.0 815,922 - Atu0817 0.43 -3.3 815,979 - Atu0817 0.49 -0.4 815,979 - Atu0817 0.49 -1.8 815,984 - Atu0817 0.50 -0.3 816,002 - Atu0817 0.51 +0.0 816,041 + Atu0817 0.56 -0.5 816,068 + Atu0817 0.58 +0.8 816,087 + Atu0817 0.60 -0.5 816,143 + Atu0817 0.66 -0.2 816,144 - Atu0817 0.66 -0.1 816,144 - Atu0817 0.66 +0.2 816,316 + Atu0817 0.84 -1.2 816,324 - Atu0817 0.85 +0.4 816,427 + -4.4 816,432 - -0.8 816,444 + -0.7 816,454 + -1.3 816,462 - +1.2 816,462 - +0.4 816,462 - -0.4 816,591 - Atu0818 0.13 -1.1 816,633 + Atu0818 0.18 -0.2 816,709 + Atu0818 0.28 -3.0 816,712 - Atu0818 0.29 -0.6 816,712 - Atu0818 0.29 -0.4 816,717 - Atu0818 0.29 -0.9 816,752 + Atu0818 0.34 -1.1 816,752 + Atu0818 0.34 -0.6 816,764 + Atu0818 0.36 +0.4 816,764 + Atu0818 0.36 -1.5 816,842 - Atu0818 0.46 -2.0 816,844 + Atu0818 0.46 +0.4 816,852 - Atu0818 0.47 -0.7 816,852 - Atu0818 0.47 -1.2 816,870 + Atu0818 0.49 -2.7 816,912 + Atu0818 0.55 -0.2 816,926 + Atu0818 0.57 -2.2 817,108 - Atu0818 0.81 -2.3 817,132 + Atu0818 0.84 -0.3 817,132 + Atu0818 0.84 +0.1 817,140 - Atu0818 0.85 -0.5 817,185 + -1.9 817,200 + -1.5 817,203 - +0.3 817,287 + +1.9 817,340 - -1.3 817,535 - Atu0819 0.12 -0.0 817,701 - Atu0819 0.50 -0.3 817,711 + Atu0819 0.52 -1.0 817,711 + Atu0819 0.52 +0.7 817,763 + Atu0819 0.64 -0.5 817,773 + Atu0819 0.66 -2.1 817,791 - Atu0819 0.71 -0.3 817,835 - Atu0819 0.80 +3.1 817,999 - -1.6 818,001 + -0.8 818,016 - -1.8 818,016 - +2.0 818,161 - -3.3 818,206 + -1.2
Or see this region's nucleotide sequence