Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0218 and Atu0219 are separated by 33 nucleotides Atu0219 and Atu0220 are separated by 34 nucleotides Atu0220 and Atu0221 are separated by 167 nucleotides
Atu0218: Atu0218 - component of type IV pilus, at 222,917 to 224,392
Atu0218
Atu0219: Atu0219 - components of type IV pilus, at 224,426 to 225,709
Atu0219
Atu0220: Atu0220 - components of type IV pilus, at 225,744 to 226,325
Atu0220
Atu0221: Atu0221 - component of type IV pilus, at 226,493 to 228,076
Atu0221
Position (kb) 224
225
226 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 223.459 kb on + strand, within Atu0218 at 223.467 kb on - strand, within Atu0218 at 223.505 kb on + strand, within Atu0218 at 223.507 kb on + strand, within Atu0218 at 223.562 kb on - strand, within Atu0218 at 223.720 kb on + strand, within Atu0218 at 223.728 kb on - strand, within Atu0218 at 223.747 kb on + strand, within Atu0218 at 223.764 kb on - strand, within Atu0218 at 223.780 kb on + strand, within Atu0218 at 223.826 kb on - strand, within Atu0218 at 223.859 kb on - strand, within Atu0218 at 223.999 kb on - strand, within Atu0218 at 224.145 kb on + strand, within Atu0218 at 224.296 kb on + strand at 224.296 kb on + strand at 224.315 kb on - strand at 224.332 kb on + strand at 224.348 kb on - strand at 224.403 kb on + strand at 224.493 kb on - strand at 224.493 kb on - strand at 224.503 kb on - strand at 224.509 kb on - strand at 224.730 kb on + strand, within Atu0219 at 224.821 kb on + strand, within Atu0219 at 224.826 kb on + strand, within Atu0219 at 224.831 kb on + strand, within Atu0219 at 224.851 kb on - strand, within Atu0219 at 224.882 kb on - strand, within Atu0219 at 224.934 kb on - strand, within Atu0219 at 225.045 kb on + strand, within Atu0219 at 225.045 kb on + strand, within Atu0219 at 225.045 kb on + strand, within Atu0219 at 225.218 kb on + strand, within Atu0219 at 225.413 kb on + strand, within Atu0219 at 225.457 kb on + strand, within Atu0219 at 225.465 kb on - strand, within Atu0219 at 225.470 kb on - strand, within Atu0219 at 225.523 kb on + strand, within Atu0219 at 225.531 kb on - strand, within Atu0219 at 225.531 kb on - strand, within Atu0219 at 225.531 kb on - strand, within Atu0219 at 225.531 kb on - strand, within Atu0219 at 225.533 kb on + strand, within Atu0219 at 225.542 kb on + strand, within Atu0219 at 225.574 kb on + strand, within Atu0219 at 225.595 kb on - strand at 225.692 kb on + strand at 225.737 kb on + strand at 225.797 kb on - strand at 225.837 kb on + strand, within Atu0220 at 225.906 kb on + strand, within Atu0220 at 225.921 kb on + strand, within Atu0220 at 225.987 kb on + strand, within Atu0220 at 226.064 kb on - strand, within Atu0220 at 226.223 kb on - strand, within Atu0220 at 226.274 kb on + strand at 226.276 kb on + strand at 226.276 kb on + strand at 226.276 kb on + strand at 226.276 kb on + strand at 226.284 kb on - strand at 226.284 kb on - strand at 226.284 kb on - strand at 226.284 kb on - strand at 226.328 kb on - strand at 226.331 kb on + strand at 226.341 kb on + strand at 226.349 kb on - strand at 226.349 kb on - strand at 226.382 kb on + strand at 226.388 kb on + strand at 226.393 kb on + strand at 226.546 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 223,459 + Atu0218 0.37 +0.2 223,467 - Atu0218 0.37 -0.8 223,505 + Atu0218 0.40 +0.6 223,507 + Atu0218 0.40 +1.2 223,562 - Atu0218 0.44 -1.3 223,720 + Atu0218 0.54 +0.5 223,728 - Atu0218 0.55 +1.2 223,747 + Atu0218 0.56 -1.1 223,764 - Atu0218 0.57 -0.4 223,780 + Atu0218 0.58 +0.6 223,826 - Atu0218 0.62 +2.3 223,859 - Atu0218 0.64 +0.4 223,999 - Atu0218 0.73 +1.6 224,145 + Atu0218 0.83 +0.5 224,296 + -3.2 224,296 + -3.0 224,315 - +0.3 224,332 + +2.8 224,348 - +0.4 224,403 + -0.6 224,493 - +0.1 224,493 - -0.0 224,503 - +1.3 224,509 - -0.1 224,730 + Atu0219 0.24 +0.3 224,821 + Atu0219 0.31 +0.6 224,826 + Atu0219 0.31 +0.8 224,831 + Atu0219 0.32 -0.1 224,851 - Atu0219 0.33 -2.0 224,882 - Atu0219 0.36 +1.3 224,934 - Atu0219 0.40 -0.3 225,045 + Atu0219 0.48 -1.4 225,045 + Atu0219 0.48 -1.1 225,045 + Atu0219 0.48 -0.6 225,218 + Atu0219 0.62 -0.2 225,413 + Atu0219 0.77 +1.1 225,457 + Atu0219 0.80 +1.2 225,465 - Atu0219 0.81 +1.7 225,470 - Atu0219 0.81 -1.4 225,523 + Atu0219 0.85 -0.7 225,531 - Atu0219 0.86 -2.4 225,531 - Atu0219 0.86 +1.1 225,531 - Atu0219 0.86 +1.4 225,531 - Atu0219 0.86 -0.7 225,533 + Atu0219 0.86 +0.5 225,542 + Atu0219 0.87 -1.2 225,574 + Atu0219 0.89 -0.8 225,595 - -0.3 225,692 + +1.0 225,737 + -0.6 225,797 - -1.5 225,837 + Atu0220 0.16 -1.8 225,906 + Atu0220 0.28 +0.5 225,921 + Atu0220 0.30 -3.5 225,987 + Atu0220 0.42 -3.3 226,064 - Atu0220 0.55 +0.4 226,223 - Atu0220 0.82 -0.5 226,274 + +0.5 226,276 + +0.4 226,276 + -1.2 226,276 + -0.6 226,276 + +1.2 226,284 - +0.9 226,284 - +0.4 226,284 - -2.8 226,284 - +0.6 226,328 - -0.8 226,331 + -0.0 226,341 + +0.8 226,349 - +1.1 226,349 - -0.1 226,382 + +1.2 226,388 + +0.2 226,393 + +0.4 226,546 - -0.4
Or see this region's nucleotide sequence