Strain Fitness in Agrobacterium fabrum C58 around Atu0215

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0214 and Atu0215 are separated by 142 nucleotidesAtu0215 and Atu0216 are separated by 63 nucleotides Atu0214: Atu0214 - leucine aminopeptidase, at 218,477 to 219,871 Atu0214 Atu0215: Atu0215 - hypothetical protein, at 220,014 to 220,838 Atu0215 Atu0216: Atu0216 - components of type IV pilus, at 220,902 to 221,888 Atu0216 Position (kb) 220 221Strain fitness (log2 ratio) -2 -1 0 1 2at 219.083 kb on + strand, within Atu0214at 219.084 kb on - strand, within Atu0214at 219.126 kb on + strand, within Atu0214at 219.148 kb on + strand, within Atu0214at 219.177 kb on + strand, within Atu0214at 219.253 kb on - strand, within Atu0214at 219.258 kb on - strand, within Atu0214at 219.322 kb on + strand, within Atu0214at 219.327 kb on + strand, within Atu0214at 219.327 kb on + strand, within Atu0214at 219.327 kb on + strand, within Atu0214at 219.335 kb on - strand, within Atu0214at 219.396 kb on + strand, within Atu0214at 219.469 kb on - strand, within Atu0214at 219.499 kb on - strand, within Atu0214at 219.599 kb on - strand, within Atu0214at 219.623 kb on + strand, within Atu0214at 219.659 kb on + strand, within Atu0214at 219.672 kb on - strand, within Atu0214at 219.744 kb on - strandat 219.754 kb on - strandat 219.754 kb on - strandat 219.754 kb on - strandat 219.773 kb on - strandat 219.914 kb on + strandat 219.974 kb on - strandat 220.058 kb on - strandat 220.063 kb on + strandat 220.208 kb on - strand, within Atu0215at 220.226 kb on + strand, within Atu0215at 220.233 kb on + strand, within Atu0215at 220.451 kb on + strand, within Atu0215at 220.459 kb on - strand, within Atu0215at 220.483 kb on + strand, within Atu0215at 220.483 kb on + strand, within Atu0215at 220.492 kb on + strand, within Atu0215at 220.567 kb on - strand, within Atu0215at 220.574 kb on + strand, within Atu0215at 220.574 kb on + strand, within Atu0215at 220.574 kb on + strand, within Atu0215at 220.576 kb on + strand, within Atu0215at 220.576 kb on + strand, within Atu0215at 220.582 kb on - strand, within Atu0215at 220.605 kb on + strand, within Atu0215at 220.605 kb on + strand, within Atu0215at 220.630 kb on + strand, within Atu0215at 220.684 kb on + strand, within Atu0215at 220.694 kb on - strand, within Atu0215at 220.694 kb on - strand, within Atu0215at 220.759 kb on - strandat 220.785 kb on + strandat 220.787 kb on + strandat 220.816 kb on - strandat 220.834 kb on + strandat 220.834 kb on + strandat 220.908 kb on - strandat 220.908 kb on - strandat 221.059 kb on + strand, within Atu0216at 221.059 kb on + strand, within Atu0216at 221.086 kb on + strand, within Atu0216at 221.101 kb on + strand, within Atu0216at 221.125 kb on - strand, within Atu0216at 221.181 kb on + strand, within Atu0216at 221.310 kb on - strand, within Atu0216at 221.312 kb on + strand, within Atu0216at 221.318 kb on + strand, within Atu0216at 221.335 kb on - strand, within Atu0216at 221.788 kb on + strand, within Atu0216at 221.826 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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219,083 + Atu0214 0.43 +0.8
219,084 - Atu0214 0.44 +0.1
219,126 + Atu0214 0.47 +0.5
219,148 + Atu0214 0.48 +0.3
219,177 + Atu0214 0.50 -0.2
219,253 - Atu0214 0.56 -0.0
219,258 - Atu0214 0.56 -0.1
219,322 + Atu0214 0.61 +0.1
219,327 + Atu0214 0.61 -1.3
219,327 + Atu0214 0.61 +0.1
219,327 + Atu0214 0.61 +0.6
219,335 - Atu0214 0.62 -0.5
219,396 + Atu0214 0.66 +0.4
219,469 - Atu0214 0.71 +0.2
219,499 - Atu0214 0.73 -0.4
219,599 - Atu0214 0.80 +1.2
219,623 + Atu0214 0.82 +2.0
219,659 + Atu0214 0.85 +0.8
219,672 - Atu0214 0.86 -0.6
219,744 - -2.2
219,754 - +0.7
219,754 - +0.9
219,754 - -0.8
219,773 - +0.9
219,914 + -0.9
219,974 - +1.5
220,058 - +0.0
220,063 + -0.9
220,208 - Atu0215 0.24 +1.2
220,226 + Atu0215 0.26 -0.3
220,233 + Atu0215 0.27 -1.0
220,451 + Atu0215 0.53 +1.2
220,459 - Atu0215 0.54 +1.3
220,483 + Atu0215 0.57 -0.8
220,483 + Atu0215 0.57 -1.1
220,492 + Atu0215 0.58 -1.5
220,567 - Atu0215 0.67 -0.3
220,574 + Atu0215 0.68 -1.8
220,574 + Atu0215 0.68 -2.0
220,574 + Atu0215 0.68 -0.6
220,576 + Atu0215 0.68 -0.8
220,576 + Atu0215 0.68 -2.3
220,582 - Atu0215 0.69 +0.6
220,605 + Atu0215 0.72 -0.9
220,605 + Atu0215 0.72 +1.3
220,630 + Atu0215 0.75 -0.4
220,684 + Atu0215 0.81 +0.4
220,694 - Atu0215 0.82 +0.9
220,694 - Atu0215 0.82 +0.4
220,759 - +0.0
220,785 + -2.2
220,787 + -1.2
220,816 - -1.4
220,834 + +0.9
220,834 + -1.4
220,908 - +0.0
220,908 - +1.2
221,059 + Atu0216 0.16 +0.9
221,059 + Atu0216 0.16 +0.2
221,086 + Atu0216 0.19 +0.9
221,101 + Atu0216 0.20 +1.0
221,125 - Atu0216 0.23 -0.0
221,181 + Atu0216 0.28 +1.2
221,310 - Atu0216 0.41 +1.9
221,312 + Atu0216 0.42 +1.0
221,318 + Atu0216 0.42 +1.2
221,335 - Atu0216 0.44 -1.3
221,788 + Atu0216 0.90 +0.1
221,826 + -0.3

Or see this region's nucleotide sequence