Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0199 and Atu0200 are separated by 150 nucleotides Atu0200 and Atu0201 are separated by 168 nucleotides Atu0201 and Atu0202 are separated by 158 nucleotides
Atu0199: Atu0199 - ABC transporter, substrate binding protein (proline/glycine/betaine), at 203,203 to 204,114
Atu0199
Atu0200: Atu0200 - hypothetical protein, at 204,265 to 205,311
Atu0200
Atu0201: Atu0201 - hypothetical protein, at 205,480 to 205,950
Atu0201
Atu0202: Atu0202 - ABC transporter, substrate binding protein (iron), at 206,109 to 207,173
Atu0202
Position (kb) 204
205
206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 203.269 kb on - strand at 203.290 kb on + strand at 203.290 kb on + strand at 203.311 kb on - strand, within Atu0199 at 203.418 kb on - strand, within Atu0199 at 203.450 kb on - strand, within Atu0199 at 203.462 kb on + strand, within Atu0199 at 203.470 kb on - strand, within Atu0199 at 203.470 kb on - strand, within Atu0199 at 203.593 kb on + strand, within Atu0199 at 203.593 kb on + strand, within Atu0199 at 203.593 kb on + strand, within Atu0199 at 203.719 kb on - strand, within Atu0199 at 203.802 kb on + strand, within Atu0199 at 203.885 kb on - strand, within Atu0199 at 203.885 kb on - strand, within Atu0199 at 203.928 kb on + strand, within Atu0199 at 203.971 kb on - strand, within Atu0199 at 203.971 kb on - strand, within Atu0199 at 203.973 kb on + strand, within Atu0199 at 204.089 kb on - strand at 204.123 kb on - strand at 204.130 kb on + strand at 204.235 kb on + strand at 204.403 kb on + strand, within Atu0200 at 204.440 kb on + strand, within Atu0200 at 204.546 kb on + strand, within Atu0200 at 204.606 kb on + strand, within Atu0200 at 204.803 kb on + strand, within Atu0200 at 204.806 kb on - strand, within Atu0200 at 204.871 kb on - strand, within Atu0200 at 204.881 kb on - strand, within Atu0200 at 204.986 kb on + strand, within Atu0200 at 205.066 kb on - strand, within Atu0200 at 205.161 kb on + strand, within Atu0200 at 205.231 kb on - strand at 205.245 kb on + strand at 205.248 kb on - strand at 205.298 kb on + strand at 205.435 kb on + strand at 205.510 kb on - strand at 205.561 kb on - strand, within Atu0201 at 205.561 kb on - strand, within Atu0201 at 205.975 kb on + strand at 206.062 kb on - strand at 206.185 kb on - strand at 206.227 kb on - strand, within Atu0202 at 206.236 kb on + strand, within Atu0202 at 206.241 kb on + strand, within Atu0202 at 206.246 kb on + strand, within Atu0202
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 203,269 - -0.5 203,290 + +1.1 203,290 + -1.2 203,311 - Atu0199 0.12 +0.4 203,418 - Atu0199 0.24 +0.2 203,450 - Atu0199 0.27 -1.2 203,462 + Atu0199 0.28 -3.3 203,470 - Atu0199 0.29 +0.8 203,470 - Atu0199 0.29 +2.1 203,593 + Atu0199 0.43 +1.2 203,593 + Atu0199 0.43 +0.1 203,593 + Atu0199 0.43 -1.9 203,719 - Atu0199 0.57 +1.9 203,802 + Atu0199 0.66 +0.7 203,885 - Atu0199 0.75 +0.5 203,885 - Atu0199 0.75 +0.2 203,928 + Atu0199 0.79 -0.0 203,971 - Atu0199 0.84 -1.9 203,971 - Atu0199 0.84 -0.7 203,973 + Atu0199 0.84 +1.0 204,089 - +2.6 204,123 - -2.3 204,130 + -1.6 204,235 + +4.5 204,403 + Atu0200 0.13 +1.0 204,440 + Atu0200 0.17 +0.0 204,546 + Atu0200 0.27 +0.1 204,606 + Atu0200 0.33 -0.1 204,803 + Atu0200 0.51 +0.2 204,806 - Atu0200 0.52 +0.7 204,871 - Atu0200 0.58 -1.2 204,881 - Atu0200 0.59 -2.1 204,986 + Atu0200 0.69 +0.5 205,066 - Atu0200 0.77 +0.0 205,161 + Atu0200 0.86 +1.5 205,231 - -1.2 205,245 + -3.2 205,248 - +0.3 205,298 + -1.0 205,435 + -0.9 205,510 - -0.0 205,561 - Atu0201 0.17 -1.0 205,561 - Atu0201 0.17 -0.8 205,975 + -1.3 206,062 - +0.8 206,185 - -0.1 206,227 - Atu0202 0.11 +1.6 206,236 + Atu0202 0.12 -0.4 206,241 + Atu0202 0.12 -0.1 206,246 + Atu0202 0.13 +0.1
Or see this region's nucleotide sequence