Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6059 and Atu6060 are separated by 170 nucleotides Atu6060 and Atu6061 overlap by 4 nucleotides
Atu6059: Atu6059 - ABC transporter, substrate binding protein (nitrate/sulfonate), at 70,516 to 71,478
Atu6059
Atu6060: Atu6060 - nitrilotriacetate monooxygenase, at 71,649 to 72,524
Atu6060
Atu6061: Atu6061 - nitrilotriacetate monooxygenase, at 72,521 to 73,768
Atu6061
Position (kb) 71
72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 70.677 kb on - strand, within Atu6059 at 70.775 kb on + strand, within Atu6059 at 70.775 kb on - strand, within Atu6059 at 70.776 kb on - strand, within Atu6059 at 70.783 kb on - strand, within Atu6059 at 70.785 kb on + strand, within Atu6059 at 70.809 kb on - strand, within Atu6059 at 70.809 kb on - strand, within Atu6059 at 70.857 kb on + strand, within Atu6059 at 70.865 kb on - strand, within Atu6059 at 70.865 kb on - strand, within Atu6059 at 70.882 kb on + strand, within Atu6059 at 70.887 kb on + strand, within Atu6059 at 70.928 kb on - strand, within Atu6059 at 70.936 kb on + strand, within Atu6059 at 70.936 kb on + strand, within Atu6059 at 70.936 kb on + strand, within Atu6059 at 70.939 kb on - strand, within Atu6059 at 70.973 kb on - strand, within Atu6059 at 71.042 kb on + strand, within Atu6059 at 71.050 kb on - strand, within Atu6059 at 71.052 kb on + strand, within Atu6059 at 71.052 kb on + strand, within Atu6059 at 71.082 kb on - strand, within Atu6059 at 71.111 kb on + strand, within Atu6059 at 71.123 kb on + strand, within Atu6059 at 71.129 kb on - strand, within Atu6059 at 71.154 kb on + strand, within Atu6059 at 71.154 kb on + strand, within Atu6059 at 71.162 kb on - strand, within Atu6059 at 71.184 kb on - strand, within Atu6059 at 71.184 kb on - strand, within Atu6059 at 71.184 kb on - strand, within Atu6059 at 71.273 kb on + strand, within Atu6059 at 71.286 kb on - strand, within Atu6059 at 71.286 kb on - strand, within Atu6059 at 71.286 kb on - strand, within Atu6059 at 71.286 kb on - strand, within Atu6059 at 71.309 kb on + strand, within Atu6059 at 71.331 kb on - strand, within Atu6059 at 71.378 kb on - strand, within Atu6059 at 71.432 kb on + strand at 71.440 kb on - strand at 71.455 kb on + strand at 71.514 kb on + strand at 71.536 kb on - strand at 71.597 kb on - strand at 71.610 kb on + strand at 71.647 kb on - strand at 71.661 kb on - strand at 71.671 kb on + strand at 71.672 kb on - strand at 71.684 kb on - strand at 71.689 kb on - strand at 71.794 kb on + strand, within Atu6060 at 71.816 kb on + strand, within Atu6060 at 71.824 kb on - strand, within Atu6060 at 71.829 kb on - strand, within Atu6060 at 71.839 kb on - strand, within Atu6060 at 71.863 kb on - strand, within Atu6060 at 71.865 kb on + strand, within Atu6060 at 71.870 kb on + strand, within Atu6060 at 71.899 kb on + strand, within Atu6060 at 71.907 kb on - strand, within Atu6060 at 71.907 kb on - strand, within Atu6060 at 71.909 kb on + strand, within Atu6060 at 71.909 kb on + strand, within Atu6060 at 71.917 kb on - strand, within Atu6060 at 71.956 kb on + strand, within Atu6060 at 71.957 kb on + strand, within Atu6060 at 71.965 kb on - strand, within Atu6060 at 71.992 kb on + strand, within Atu6060 at 72.003 kb on + strand, within Atu6060 at 72.003 kb on + strand, within Atu6060 at 72.011 kb on - strand, within Atu6060 at 72.011 kb on - strand, within Atu6060 at 72.011 kb on - strand, within Atu6060 at 72.011 kb on - strand, within Atu6060 at 72.013 kb on + strand, within Atu6060 at 72.068 kb on + strand, within Atu6060 at 72.082 kb on + strand, within Atu6060 at 72.122 kb on + strand, within Atu6060 at 72.122 kb on + strand, within Atu6060 at 72.141 kb on + strand, within Atu6060 at 72.141 kb on + strand, within Atu6060 at 72.141 kb on + strand, within Atu6060 at 72.141 kb on + strand, within Atu6060 at 72.141 kb on + strand, within Atu6060 at 72.141 kb on + strand, within Atu6060 at 72.141 kb on + strand, within Atu6060 at 72.149 kb on - strand, within Atu6060 at 72.164 kb on - strand, within Atu6060 at 72.164 kb on - strand, within Atu6060 at 72.170 kb on + strand, within Atu6060 at 72.178 kb on + strand, within Atu6060 at 72.278 kb on + strand, within Atu6060 at 72.278 kb on + strand, within Atu6060 at 72.299 kb on - strand, within Atu6060 at 72.341 kb on + strand, within Atu6060 at 72.341 kb on + strand, within Atu6060 at 72.341 kb on + strand, within Atu6060 at 72.341 kb on + strand, within Atu6060 at 72.341 kb on + strand, within Atu6060 at 72.347 kb on - strand, within Atu6060 at 72.349 kb on - strand, within Atu6060 at 72.389 kb on + strand, within Atu6060 at 72.411 kb on + strand, within Atu6060 at 72.418 kb on + strand, within Atu6060 at 72.430 kb on + strand, within Atu6060 at 72.431 kb on - strand, within Atu6060 at 72.438 kb on - strand at 72.438 kb on - strand at 72.438 kb on - strand at 72.476 kb on - strand at 72.476 kb on - strand at 72.498 kb on - strand at 72.542 kb on + strand at 72.542 kb on + strand at 72.550 kb on - strand at 72.579 kb on - strand at 72.653 kb on + strand, within Atu6061 at 72.713 kb on + strand, within Atu6061 at 72.713 kb on + strand, within Atu6061 at 72.715 kb on + strand, within Atu6061 at 72.751 kb on + strand, within Atu6061 at 72.802 kb on + strand, within Atu6061 at 72.844 kb on - strand, within Atu6061 at 72.851 kb on + strand, within Atu6061 at 72.862 kb on + strand, within Atu6061 at 72.881 kb on + strand, within Atu6061 at 72.881 kb on + strand, within Atu6061 at 72.881 kb on + strand, within Atu6061 at 72.889 kb on - strand, within Atu6061 at 72.889 kb on - strand, within Atu6061 at 72.889 kb on - strand, within Atu6061 at 72.889 kb on - strand, within Atu6061 at 72.889 kb on - strand, within Atu6061 at 72.954 kb on - strand, within Atu6061 at 72.960 kb on + strand, within Atu6061 at 72.976 kb on + strand, within Atu6061 at 72.981 kb on + strand, within Atu6061 at 72.981 kb on + strand, within Atu6061 at 72.986 kb on + strand, within Atu6061 at 72.986 kb on + strand, within Atu6061 at 72.989 kb on - strand, within Atu6061 at 72.989 kb on - strand, within Atu6061 at 72.989 kb on - strand, within Atu6061 at 72.994 kb on - strand, within Atu6061 at 73.029 kb on + strand, within Atu6061 at 73.029 kb on + strand, within Atu6061 at 73.052 kb on + strand, within Atu6061 at 73.052 kb on + strand, within Atu6061 at 73.052 kb on + strand, within Atu6061 at 73.052 kb on + strand, within Atu6061 at 73.060 kb on - strand, within Atu6061 at 73.060 kb on - strand, within Atu6061 at 73.067 kb on + strand, within Atu6061 at 73.078 kb on + strand, within Atu6061 at 73.114 kb on + strand, within Atu6061 at 73.132 kb on + strand, within Atu6061 at 73.168 kb on + strand, within Atu6061 at 73.227 kb on + strand, within Atu6061 at 73.227 kb on + strand, within Atu6061 at 73.235 kb on - strand, within Atu6061 at 73.235 kb on - strand, within Atu6061 at 73.235 kb on - strand, within Atu6061 at 73.257 kb on + strand, within Atu6061 at 73.265 kb on - strand, within Atu6061 at 73.322 kb on + strand, within Atu6061 at 73.328 kb on - strand, within Atu6061 at 73.330 kb on - strand, within Atu6061 at 73.347 kb on + strand, within Atu6061 at 73.411 kb on + strand, within Atu6061 at 73.477 kb on - strand, within Atu6061 at 73.497 kb on - strand, within Atu6061
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 70,677 - Atu6059 0.17 -2.5 70,775 + Atu6059 0.27 +2.1 70,775 - Atu6059 0.27 -3.3 70,776 - Atu6059 0.27 +0.4 70,783 - Atu6059 0.28 -1.6 70,785 + Atu6059 0.28 -2.2 70,809 - Atu6059 0.30 -3.0 70,809 - Atu6059 0.30 -1.2 70,857 + Atu6059 0.35 +1.6 70,865 - Atu6059 0.36 +0.1 70,865 - Atu6059 0.36 -3.1 70,882 + Atu6059 0.38 -1.4 70,887 + Atu6059 0.39 +0.8 70,928 - Atu6059 0.43 +0.2 70,936 + Atu6059 0.44 +0.7 70,936 + Atu6059 0.44 -1.0 70,936 + Atu6059 0.44 -1.5 70,939 - Atu6059 0.44 -1.1 70,973 - Atu6059 0.47 -0.1 71,042 + Atu6059 0.55 -2.6 71,050 - Atu6059 0.55 -1.1 71,052 + Atu6059 0.56 +1.3 71,052 + Atu6059 0.56 +0.5 71,082 - Atu6059 0.59 -0.2 71,111 + Atu6059 0.62 +0.7 71,123 + Atu6059 0.63 -1.8 71,129 - Atu6059 0.64 -1.2 71,154 + Atu6059 0.66 -1.1 71,154 + Atu6059 0.66 +0.2 71,162 - Atu6059 0.67 +0.1 71,184 - Atu6059 0.69 +0.5 71,184 - Atu6059 0.69 +0.4 71,184 - Atu6059 0.69 -1.6 71,273 + Atu6059 0.79 -1.2 71,286 - Atu6059 0.80 +0.9 71,286 - Atu6059 0.80 +0.4 71,286 - Atu6059 0.80 +0.1 71,286 - Atu6059 0.80 -3.6 71,309 + Atu6059 0.82 +0.0 71,331 - Atu6059 0.85 -3.5 71,378 - Atu6059 0.90 +2.7 71,432 + -0.5 71,440 - -1.2 71,455 + -0.3 71,514 + -1.0 71,536 - -2.2 71,597 - +0.7 71,610 + -0.0 71,647 - +0.3 71,661 - +1.6 71,671 + -0.8 71,672 - +1.9 71,684 - -1.3 71,689 - -1.4 71,794 + Atu6060 0.17 -2.7 71,816 + Atu6060 0.19 +1.7 71,824 - Atu6060 0.20 +1.3 71,829 - Atu6060 0.21 -1.5 71,839 - Atu6060 0.22 -2.3 71,863 - Atu6060 0.24 -1.1 71,865 + Atu6060 0.25 +0.8 71,870 + Atu6060 0.25 -0.1 71,899 + Atu6060 0.29 -0.4 71,907 - Atu6060 0.29 +1.4 71,907 - Atu6060 0.29 -0.7 71,909 + Atu6060 0.30 -1.3 71,909 + Atu6060 0.30 -0.6 71,917 - Atu6060 0.31 -0.3 71,956 + Atu6060 0.35 -0.3 71,957 + Atu6060 0.35 -0.3 71,965 - Atu6060 0.36 +0.7 71,992 + Atu6060 0.39 +0.8 72,003 + Atu6060 0.40 +2.0 72,003 + Atu6060 0.40 +0.3 72,011 - Atu6060 0.41 +0.1 72,011 - Atu6060 0.41 -0.5 72,011 - Atu6060 0.41 -1.2 72,011 - Atu6060 0.41 -0.9 72,013 + Atu6060 0.42 -0.3 72,068 + Atu6060 0.48 +1.0 72,082 + Atu6060 0.49 -0.4 72,122 + Atu6060 0.54 +1.3 72,122 + Atu6060 0.54 +0.3 72,141 + Atu6060 0.56 +1.3 72,141 + Atu6060 0.56 +0.7 72,141 + Atu6060 0.56 -1.1 72,141 + Atu6060 0.56 -1.2 72,141 + Atu6060 0.56 -2.4 72,141 + Atu6060 0.56 +0.7 72,141 + Atu6060 0.56 -1.0 72,149 - Atu6060 0.57 -0.1 72,164 - Atu6060 0.59 +0.4 72,164 - Atu6060 0.59 -0.6 72,170 + Atu6060 0.59 +0.3 72,178 + Atu6060 0.60 -0.3 72,278 + Atu6060 0.72 +0.2 72,278 + Atu6060 0.72 +1.3 72,299 - Atu6060 0.74 +0.6 72,341 + Atu6060 0.79 +0.2 72,341 + Atu6060 0.79 -0.4 72,341 + Atu6060 0.79 +1.1 72,341 + Atu6060 0.79 -0.3 72,341 + Atu6060 0.79 +2.8 72,347 - Atu6060 0.80 -0.4 72,349 - Atu6060 0.80 -0.2 72,389 + Atu6060 0.84 +1.0 72,411 + Atu6060 0.87 +0.2 72,418 + Atu6060 0.88 -0.3 72,430 + Atu6060 0.89 -0.3 72,431 - Atu6060 0.89 +1.0 72,438 - -0.1 72,438 - -2.0 72,438 - -1.8 72,476 - -1.6 72,476 - +1.5 72,498 - -0.1 72,542 + -0.5 72,542 + +0.0 72,550 - +0.4 72,579 - -0.4 72,653 + Atu6061 0.11 +0.8 72,713 + Atu6061 0.15 +0.4 72,713 + Atu6061 0.15 -0.1 72,715 + Atu6061 0.16 -1.9 72,751 + Atu6061 0.18 +0.6 72,802 + Atu6061 0.23 +0.6 72,844 - Atu6061 0.26 -0.3 72,851 + Atu6061 0.26 +1.9 72,862 + Atu6061 0.27 -0.1 72,881 + Atu6061 0.29 -0.0 72,881 + Atu6061 0.29 -1.8 72,881 + Atu6061 0.29 -0.4 72,889 - Atu6061 0.29 -3.0 72,889 - Atu6061 0.29 -2.1 72,889 - Atu6061 0.29 +3.8 72,889 - Atu6061 0.29 +3.3 72,889 - Atu6061 0.29 -0.6 72,954 - Atu6061 0.35 +1.2 72,960 + Atu6061 0.35 -0.7 72,976 + Atu6061 0.36 +3.0 72,981 + Atu6061 0.37 +0.1 72,981 + Atu6061 0.37 +0.3 72,986 + Atu6061 0.37 +0.6 72,986 + Atu6061 0.37 -0.8 72,989 - Atu6061 0.38 -0.7 72,989 - Atu6061 0.38 +0.5 72,989 - Atu6061 0.38 +0.9 72,994 - Atu6061 0.38 +0.4 73,029 + Atu6061 0.41 +1.8 73,029 + Atu6061 0.41 +0.6 73,052 + Atu6061 0.43 -1.0 73,052 + Atu6061 0.43 +0.6 73,052 + Atu6061 0.43 -0.9 73,052 + Atu6061 0.43 -0.6 73,060 - Atu6061 0.43 -2.6 73,060 - Atu6061 0.43 +0.3 73,067 + Atu6061 0.44 +1.1 73,078 + Atu6061 0.45 -0.1 73,114 + Atu6061 0.48 +0.9 73,132 + Atu6061 0.49 +0.2 73,168 + Atu6061 0.52 +3.4 73,227 + Atu6061 0.57 -0.6 73,227 + Atu6061 0.57 +1.9 73,235 - Atu6061 0.57 -1.7 73,235 - Atu6061 0.57 -1.6 73,235 - Atu6061 0.57 +0.4 73,257 + Atu6061 0.59 -1.4 73,265 - Atu6061 0.60 -0.0 73,322 + Atu6061 0.64 +1.2 73,328 - Atu6061 0.65 -1.1 73,330 - Atu6061 0.65 -2.7 73,347 + Atu6061 0.66 -1.4 73,411 + Atu6061 0.71 -1.8 73,477 - Atu6061 0.77 +1.9 73,497 - Atu6061 0.78 -0.3
Or see this region's nucleotide sequence