Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5496 and Atu5497 are separated by 264 nucleotides Atu5497 and Atu5498 are separated by 127 nucleotides Atu5498 and Atu5499 overlap by 4 nucleotides
Atu5496: Atu5496 - TetR family transcriptional regulator, at 486,325 to 486,867
Atu5496
Atu5497: Atu5497 - hypothetical protein, at 487,132 to 488,121
Atu5497
Atu5498: Atu5498 - oxidoreductase with iron-sulfur subunit, at 488,249 to 488,782
Atu5498
Atu5499: Atu5499 - oxidoreductase, at 488,779 to 489,768
Atu5499
Position (kb) 487
488
489 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 486.165 kb on + strand at 486.201 kb on + strand at 486.209 kb on - strand at 486.209 kb on - strand at 486.395 kb on + strand, within Atu5496 at 486.403 kb on - strand, within Atu5496 at 486.406 kb on - strand, within Atu5496 at 486.408 kb on - strand, within Atu5496 at 486.424 kb on + strand, within Atu5496 at 486.445 kb on - strand, within Atu5496 at 486.456 kb on - strand, within Atu5496 at 486.473 kb on + strand, within Atu5496 at 486.478 kb on + strand, within Atu5496 at 486.531 kb on + strand, within Atu5496 at 486.577 kb on - strand, within Atu5496 at 486.668 kb on + strand, within Atu5496 at 486.668 kb on - strand, within Atu5496 at 486.678 kb on + strand, within Atu5496 at 486.693 kb on + strand, within Atu5496 at 486.714 kb on + strand, within Atu5496 at 486.714 kb on - strand, within Atu5496 at 486.719 kb on - strand, within Atu5496 at 486.720 kb on - strand, within Atu5496 at 486.731 kb on + strand, within Atu5496 at 486.756 kb on + strand, within Atu5496 at 486.909 kb on + strand at 486.909 kb on + strand at 486.917 kb on - strand at 486.923 kb on - strand at 487.077 kb on - strand at 487.077 kb on - strand at 487.106 kb on + strand at 487.129 kb on + strand at 487.263 kb on - strand, within Atu5497 at 487.283 kb on + strand, within Atu5497 at 487.283 kb on + strand, within Atu5497 at 487.349 kb on + strand, within Atu5497 at 487.353 kb on + strand, within Atu5497 at 487.353 kb on + strand, within Atu5497 at 487.361 kb on - strand, within Atu5497 at 487.523 kb on + strand, within Atu5497 at 487.531 kb on - strand, within Atu5497 at 487.560 kb on - strand, within Atu5497 at 487.571 kb on - strand, within Atu5497 at 487.601 kb on + strand, within Atu5497 at 487.601 kb on + strand, within Atu5497 at 487.625 kb on + strand, within Atu5497 at 487.654 kb on - strand, within Atu5497 at 487.708 kb on - strand, within Atu5497 at 487.812 kb on - strand, within Atu5497 at 487.938 kb on - strand, within Atu5497 at 487.940 kb on + strand, within Atu5497 at 487.948 kb on - strand, within Atu5497 at 487.959 kb on - strand, within Atu5497 at 488.040 kb on + strand at 488.040 kb on + strand at 488.040 kb on + strand at 488.048 kb on - strand at 488.048 kb on - strand at 488.048 kb on - strand at 488.055 kb on + strand at 488.095 kb on + strand at 488.140 kb on - strand at 488.162 kb on - strand at 488.212 kb on - strand at 488.244 kb on + strand at 488.252 kb on - strand at 488.308 kb on + strand, within Atu5498 at 488.316 kb on - strand, within Atu5498 at 488.356 kb on - strand, within Atu5498 at 488.368 kb on + strand, within Atu5498 at 488.395 kb on - strand, within Atu5498 at 488.430 kb on - strand, within Atu5498 at 488.440 kb on - strand, within Atu5498 at 488.462 kb on + strand, within Atu5498 at 488.470 kb on - strand, within Atu5498 at 488.470 kb on - strand, within Atu5498 at 488.496 kb on - strand, within Atu5498 at 488.496 kb on - strand, within Atu5498 at 488.557 kb on + strand, within Atu5498 at 488.557 kb on + strand, within Atu5498 at 488.624 kb on - strand, within Atu5498 at 488.714 kb on + strand, within Atu5498 at 488.717 kb on - strand, within Atu5498 at 488.733 kb on + strand at 488.748 kb on + strand at 488.777 kb on - strand at 488.862 kb on + strand at 488.900 kb on + strand, within Atu5499 at 488.908 kb on - strand, within Atu5499 at 488.935 kb on + strand, within Atu5499 at 488.943 kb on - strand, within Atu5499 at 488.943 kb on - strand, within Atu5499 at 488.977 kb on - strand, within Atu5499 at 488.984 kb on + strand, within Atu5499 at 488.989 kb on + strand, within Atu5499 at 488.997 kb on - strand, within Atu5499 at 489.002 kb on - strand, within Atu5499 at 489.002 kb on - strand, within Atu5499 at 489.030 kb on + strand, within Atu5499 at 489.056 kb on - strand, within Atu5499 at 489.060 kb on + strand, within Atu5499
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 486,165 + +2.0 486,201 + +0.5 486,209 - -0.5 486,209 - -1.0 486,395 + Atu5496 0.13 -1.7 486,403 - Atu5496 0.14 +0.9 486,406 - Atu5496 0.15 +0.5 486,408 - Atu5496 0.15 +1.1 486,424 + Atu5496 0.18 +0.0 486,445 - Atu5496 0.22 -0.4 486,456 - Atu5496 0.24 -3.7 486,473 + Atu5496 0.27 -1.7 486,478 + Atu5496 0.28 +0.5 486,531 + Atu5496 0.38 -2.6 486,577 - Atu5496 0.46 -1.5 486,668 + Atu5496 0.63 +3.1 486,668 - Atu5496 0.63 -0.5 486,678 + Atu5496 0.65 +1.5 486,693 + Atu5496 0.68 -1.2 486,714 + Atu5496 0.72 -2.5 486,714 - Atu5496 0.72 -1.0 486,719 - Atu5496 0.73 +1.9 486,720 - Atu5496 0.73 -0.8 486,731 + Atu5496 0.75 +0.4 486,756 + Atu5496 0.79 -0.0 486,909 + +0.9 486,909 + -0.5 486,917 - -0.7 486,923 - +1.2 487,077 - +0.9 487,077 - -0.0 487,106 + +1.3 487,129 + -0.1 487,263 - Atu5497 0.13 +0.2 487,283 + Atu5497 0.15 +0.8 487,283 + Atu5497 0.15 +0.5 487,349 + Atu5497 0.22 +0.5 487,353 + Atu5497 0.22 +1.3 487,353 + Atu5497 0.22 +1.4 487,361 - Atu5497 0.23 +1.0 487,523 + Atu5497 0.39 -1.0 487,531 - Atu5497 0.40 -1.2 487,560 - Atu5497 0.43 +1.0 487,571 - Atu5497 0.44 +1.5 487,601 + Atu5497 0.47 +0.4 487,601 + Atu5497 0.47 -0.5 487,625 + Atu5497 0.50 -1.4 487,654 - Atu5497 0.53 +0.2 487,708 - Atu5497 0.58 -0.4 487,812 - Atu5497 0.69 -0.2 487,938 - Atu5497 0.81 +2.5 487,940 + Atu5497 0.82 +3.4 487,948 - Atu5497 0.82 -0.6 487,959 - Atu5497 0.84 -0.7 488,040 + +0.5 488,040 + -0.5 488,040 + -1.4 488,048 - +1.1 488,048 - +0.3 488,048 - +0.8 488,055 + -0.8 488,095 + +0.2 488,140 - -0.3 488,162 - -0.1 488,212 - +0.6 488,244 + +3.9 488,252 - +0.0 488,308 + Atu5498 0.11 +0.6 488,316 - Atu5498 0.13 -0.8 488,356 - Atu5498 0.20 +4.2 488,368 + Atu5498 0.22 +0.9 488,395 - Atu5498 0.27 +0.3 488,430 - Atu5498 0.34 -0.9 488,440 - Atu5498 0.36 -0.0 488,462 + Atu5498 0.40 -1.1 488,470 - Atu5498 0.41 +0.8 488,470 - Atu5498 0.41 +0.5 488,496 - Atu5498 0.46 +0.8 488,496 - Atu5498 0.46 +1.9 488,557 + Atu5498 0.58 -0.5 488,557 + Atu5498 0.58 +0.4 488,624 - Atu5498 0.70 +0.2 488,714 + Atu5498 0.87 -0.6 488,717 - Atu5498 0.88 +0.4 488,733 + +1.6 488,748 + +1.3 488,777 - -0.5 488,862 + -1.0 488,900 + Atu5499 0.12 -0.4 488,908 - Atu5499 0.13 -3.1 488,935 + Atu5499 0.16 +0.5 488,943 - Atu5499 0.17 -1.6 488,943 - Atu5499 0.17 -1.0 488,977 - Atu5499 0.20 +0.9 488,984 + Atu5499 0.21 +1.1 488,989 + Atu5499 0.21 -0.3 488,997 - Atu5499 0.22 -0.5 489,002 - Atu5499 0.23 -0.4 489,002 - Atu5499 0.23 -0.2 489,030 + Atu5499 0.25 +0.9 489,056 - Atu5499 0.28 -1.5 489,060 + Atu5499 0.28 -1.1
Or see this region's nucleotide sequence