Strain Fitness in Agrobacterium fabrum C58 around Atu5457

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu5456 and Atu5457 are separated by 115 nucleotidesAtu5457 and Atu5458 overlap by 4 nucleotides Atu5456: Atu5456 - hypothetical protein, at 448,384 to 449,295 Atu5456 Atu5457: Atu5457 - dihydrodipicolinate synthase, at 449,411 to 450,319 Atu5457 Atu5458: Atu5458 - isomerase/lactonizing enzyme, at 450,316 to 451,482 Atu5458 Position (kb) 449 450 451Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 448.514 kb on + strand, within Atu5456at 448.550 kb on + strand, within Atu5456at 448.550 kb on + strand, within Atu5456at 448.551 kb on - strand, within Atu5456at 448.584 kb on + strand, within Atu5456at 448.599 kb on - strand, within Atu5456at 448.670 kb on + strand, within Atu5456at 448.680 kb on + strand, within Atu5456at 448.680 kb on + strand, within Atu5456at 448.680 kb on + strand, within Atu5456at 448.697 kb on + strand, within Atu5456at 448.734 kb on + strand, within Atu5456at 448.742 kb on - strand, within Atu5456at 448.742 kb on - strand, within Atu5456at 448.742 kb on - strand, within Atu5456at 448.830 kb on - strand, within Atu5456at 448.868 kb on + strand, within Atu5456at 448.920 kb on - strand, within Atu5456at 448.954 kb on - strand, within Atu5456at 448.956 kb on - strand, within Atu5456at 448.974 kb on + strand, within Atu5456at 449.006 kb on + strand, within Atu5456at 449.084 kb on + strand, within Atu5456at 449.138 kb on + strand, within Atu5456at 449.138 kb on + strand, within Atu5456at 449.143 kb on + strand, within Atu5456at 449.143 kb on + strand, within Atu5456at 449.148 kb on + strand, within Atu5456at 449.148 kb on + strand, within Atu5456at 449.151 kb on - strand, within Atu5456at 449.151 kb on - strand, within Atu5456at 449.153 kb on + strand, within Atu5456at 449.161 kb on - strand, within Atu5456at 449.436 kb on + strandat 449.439 kb on - strandat 449.439 kb on - strandat 449.444 kb on - strandat 449.495 kb on - strandat 449.515 kb on + strand, within Atu5457at 449.522 kb on + strand, within Atu5457at 449.530 kb on - strand, within Atu5457at 449.652 kb on - strand, within Atu5457at 449.672 kb on - strand, within Atu5457at 449.682 kb on - strand, within Atu5457at 449.754 kb on + strand, within Atu5457at 449.754 kb on + strand, within Atu5457at 449.754 kb on + strand, within Atu5457at 449.762 kb on - strand, within Atu5457at 449.826 kb on + strand, within Atu5457at 449.826 kb on + strand, within Atu5457at 449.834 kb on - strand, within Atu5457at 449.834 kb on - strand, within Atu5457at 449.841 kb on + strand, within Atu5457at 449.841 kb on + strand, within Atu5457at 450.052 kb on + strand, within Atu5457at 450.122 kb on + strand, within Atu5457at 450.214 kb on - strand, within Atu5457at 450.335 kb on + strandat 450.344 kb on - strandat 450.385 kb on - strandat 450.417 kb on + strandat 450.419 kb on + strandat 450.419 kb on + strandat 450.427 kb on - strandat 450.446 kb on - strand, within Atu5458at 450.456 kb on - strand, within Atu5458at 450.456 kb on - strand, within Atu5458at 450.458 kb on + strand, within Atu5458at 450.472 kb on + strand, within Atu5458at 450.488 kb on + strand, within Atu5458at 450.513 kb on + strand, within Atu5458at 450.514 kb on + strand, within Atu5458at 450.558 kb on + strand, within Atu5458at 450.566 kb on - strand, within Atu5458at 450.605 kb on + strand, within Atu5458at 450.651 kb on + strand, within Atu5458at 450.659 kb on - strand, within Atu5458at 450.713 kb on + strand, within Atu5458at 450.772 kb on + strand, within Atu5458at 450.778 kb on - strand, within Atu5458at 450.793 kb on - strand, within Atu5458at 450.803 kb on - strand, within Atu5458at 450.851 kb on + strand, within Atu5458at 450.955 kb on + strand, within Atu5458at 450.963 kb on - strand, within Atu5458at 451.006 kb on + strand, within Atu5458at 451.021 kb on - strand, within Atu5458at 451.021 kb on - strand, within Atu5458at 451.041 kb on + strand, within Atu5458at 451.188 kb on + strand, within Atu5458at 451.194 kb on - strand, within Atu5458at 451.255 kb on - strand, within Atu5458at 451.285 kb on - strand, within Atu5458

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
remove
448,514 + Atu5456 0.14 +1.7
448,550 + Atu5456 0.18 -0.8
448,550 + Atu5456 0.18 +1.2
448,551 - Atu5456 0.18 +1.2
448,584 + Atu5456 0.22 +3.9
448,599 - Atu5456 0.24 +1.6
448,670 + Atu5456 0.31 +1.3
448,680 + Atu5456 0.32 -0.9
448,680 + Atu5456 0.32 -0.4
448,680 + Atu5456 0.32 +1.6
448,697 + Atu5456 0.34 +1.4
448,734 + Atu5456 0.38 +0.9
448,742 - Atu5456 0.39 -0.1
448,742 - Atu5456 0.39 -0.7
448,742 - Atu5456 0.39 -0.4
448,830 - Atu5456 0.49 -1.7
448,868 + Atu5456 0.53 -1.2
448,920 - Atu5456 0.59 -1.4
448,954 - Atu5456 0.62 -1.3
448,956 - Atu5456 0.63 +0.1
448,974 + Atu5456 0.65 -3.6
449,006 + Atu5456 0.68 +0.1
449,084 + Atu5456 0.77 +1.3
449,138 + Atu5456 0.83 +1.5
449,138 + Atu5456 0.83 -0.1
449,143 + Atu5456 0.83 -2.3
449,143 + Atu5456 0.83 +1.3
449,148 + Atu5456 0.84 -0.9
449,148 + Atu5456 0.84 -1.0
449,151 - Atu5456 0.84 +0.5
449,151 - Atu5456 0.84 -1.3
449,153 + Atu5456 0.84 +1.6
449,161 - Atu5456 0.85 +1.3
449,436 + +0.9
449,439 - -1.1
449,439 - +0.6
449,444 - +1.8
449,495 - -0.9
449,515 + Atu5457 0.11 -0.4
449,522 + Atu5457 0.12 +0.5
449,530 - Atu5457 0.13 -1.6
449,652 - Atu5457 0.27 +1.8
449,672 - Atu5457 0.29 +0.9
449,682 - Atu5457 0.30 +0.8
449,754 + Atu5457 0.38 -2.5
449,754 + Atu5457 0.38 +2.4
449,754 + Atu5457 0.38 -0.8
449,762 - Atu5457 0.39 -0.2
449,826 + Atu5457 0.46 -0.4
449,826 + Atu5457 0.46 -0.1
449,834 - Atu5457 0.47 -0.2
449,834 - Atu5457 0.47 -2.4
449,841 + Atu5457 0.47 +2.7
449,841 + Atu5457 0.47 -1.7
450,052 + Atu5457 0.71 +2.3
450,122 + Atu5457 0.78 -0.8
450,214 - Atu5457 0.88 -1.0
450,335 + +0.6
450,344 - +1.8
450,385 - +0.5
450,417 + -0.8
450,419 + -2.7
450,419 + +0.1
450,427 - -1.3
450,446 - Atu5458 0.11 -1.2
450,456 - Atu5458 0.12 +0.3
450,456 - Atu5458 0.12 +1.7
450,458 + Atu5458 0.12 -2.5
450,472 + Atu5458 0.13 -2.0
450,488 + Atu5458 0.15 -0.5
450,513 + Atu5458 0.17 +0.5
450,514 + Atu5458 0.17 -1.2
450,558 + Atu5458 0.21 +1.2
450,566 - Atu5458 0.21 +0.2
450,605 + Atu5458 0.25 +1.0
450,651 + Atu5458 0.29 +1.5
450,659 - Atu5458 0.29 -1.5
450,713 + Atu5458 0.34 +4.1
450,772 + Atu5458 0.39 +1.0
450,778 - Atu5458 0.40 -0.5
450,793 - Atu5458 0.41 -0.2
450,803 - Atu5458 0.42 -1.7
450,851 + Atu5458 0.46 -1.8
450,955 + Atu5458 0.55 +0.9
450,963 - Atu5458 0.55 +0.2
451,006 + Atu5458 0.59 +1.1
451,021 - Atu5458 0.60 -0.3
451,021 - Atu5458 0.60 +1.8
451,041 + Atu5458 0.62 -0.2
451,188 + Atu5458 0.75 -1.4
451,194 - Atu5458 0.75 -3.5
451,255 - Atu5458 0.80 -2.7
451,285 - Atu5458 0.83 +1.2

Or see this region's nucleotide sequence