Strain Fitness in Agrobacterium fabrum C58 around Atu5203

Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5202 and Atu5203 are separated by 48 nucleotidesAtu5203 and Atu5204 are separated by 118 nucleotides Atu5202: Atu5202 - alcohol dehydrogenase, at 199,446 to 200,564 Atu5202 Atu5203: Atu5203 - beta-lactamase, at 200,613 to 201,692 Atu5203 Atu5204: Atu5204 - aldehyde dehydrogenase, at 201,811 to 203,265 Atu5204 Position (kb) 200 201 202Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 199.715 kb on + strand, within Atu5202at 199.717 kb on + strand, within Atu5202at 199.816 kb on + strand, within Atu5202at 199.816 kb on + strand, within Atu5202at 199.816 kb on + strand, within Atu5202at 199.824 kb on - strand, within Atu5202at 199.824 kb on - strand, within Atu5202at 199.855 kb on + strand, within Atu5202at 199.855 kb on + strand, within Atu5202at 199.855 kb on + strand, within Atu5202at 199.855 kb on + strand, within Atu5202at 199.873 kb on - strand, within Atu5202at 199.893 kb on + strand, within Atu5202at 199.901 kb on - strand, within Atu5202at 199.901 kb on - strand, within Atu5202at 199.914 kb on - strand, within Atu5202at 199.940 kb on + strand, within Atu5202at 199.954 kb on + strand, within Atu5202at 199.991 kb on - strand, within Atu5202at 199.991 kb on - strand, within Atu5202at 200.001 kb on - strand, within Atu5202at 200.120 kb on + strand, within Atu5202at 200.128 kb on - strand, within Atu5202at 200.128 kb on - strand, within Atu5202at 200.131 kb on + strand, within Atu5202at 200.153 kb on - strand, within Atu5202at 200.159 kb on - strand, within Atu5202at 200.163 kb on - strand, within Atu5202at 200.163 kb on - strand, within Atu5202at 200.257 kb on - strand, within Atu5202at 200.275 kb on + strand, within Atu5202at 200.275 kb on + strand, within Atu5202at 200.283 kb on - strand, within Atu5202at 200.348 kb on + strand, within Atu5202at 200.353 kb on + strand, within Atu5202at 200.367 kb on - strand, within Atu5202at 200.382 kb on - strand, within Atu5202at 200.440 kb on + strand, within Atu5202at 200.525 kb on + strandat 200.525 kb on + strandat 200.525 kb on + strandat 200.557 kb on + strandat 200.602 kb on + strandat 200.602 kb on + strandat 200.636 kb on + strandat 200.691 kb on - strandat 200.705 kb on + strandat 200.720 kb on - strandat 200.801 kb on - strand, within Atu5203at 200.829 kb on + strand, within Atu5203at 200.871 kb on + strand, within Atu5203at 200.926 kb on - strand, within Atu5203at 200.966 kb on + strand, within Atu5203at 201.053 kb on + strand, within Atu5203at 201.053 kb on + strand, within Atu5203at 201.115 kb on + strand, within Atu5203at 201.123 kb on - strand, within Atu5203at 201.398 kb on + strand, within Atu5203at 201.429 kb on - strand, within Atu5203at 201.442 kb on - strand, within Atu5203at 201.488 kb on - strand, within Atu5203at 201.549 kb on + strand, within Atu5203at 201.549 kb on + strand, within Atu5203at 201.554 kb on + strand, within Atu5203at 201.554 kb on + strand, within Atu5203at 201.554 kb on + strand, within Atu5203at 201.554 kb on + strand, within Atu5203at 201.559 kb on + strand, within Atu5203at 201.562 kb on - strand, within Atu5203at 201.602 kb on + strandat 201.602 kb on + strandat 201.689 kb on - strandat 201.715 kb on + strandat 201.729 kb on + strandat 201.895 kb on + strandat 202.007 kb on + strand, within Atu5204at 202.071 kb on + strand, within Atu5204at 202.143 kb on + strand, within Atu5204at 202.153 kb on + strand, within Atu5204at 202.161 kb on - strand, within Atu5204at 202.172 kb on - strand, within Atu5204at 202.232 kb on - strand, within Atu5204at 202.300 kb on - strand, within Atu5204at 202.358 kb on - strand, within Atu5204at 202.447 kb on - strand, within Atu5204at 202.447 kb on - strand, within Atu5204at 202.599 kb on + strand, within Atu5204at 202.607 kb on - strand, within Atu5204at 202.637 kb on - strand, within Atu5204at 202.643 kb on + strand, within Atu5204at 202.648 kb on + strand, within Atu5204at 202.661 kb on - strand, within Atu5204at 202.675 kb on - strand, within Atu5204at 202.678 kb on + strand, within Atu5204

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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199,715 + Atu5202 0.24 -2.4
199,717 + Atu5202 0.24 -0.5
199,816 + Atu5202 0.33 +2.4
199,816 + Atu5202 0.33 +0.7
199,816 + Atu5202 0.33 +0.3
199,824 - Atu5202 0.34 -3.4
199,824 - Atu5202 0.34 +0.2
199,855 + Atu5202 0.37 -0.1
199,855 + Atu5202 0.37 -0.4
199,855 + Atu5202 0.37 -1.2
199,855 + Atu5202 0.37 +1.6
199,873 - Atu5202 0.38 +0.1
199,893 + Atu5202 0.40 -0.4
199,901 - Atu5202 0.41 -0.4
199,901 - Atu5202 0.41 -2.6
199,914 - Atu5202 0.42 +0.5
199,940 + Atu5202 0.44 +2.5
199,954 + Atu5202 0.45 +0.4
199,991 - Atu5202 0.49 -1.9
199,991 - Atu5202 0.49 +0.1
200,001 - Atu5202 0.50 +0.6
200,120 + Atu5202 0.60 -0.2
200,128 - Atu5202 0.61 +3.0
200,128 - Atu5202 0.61 +0.2
200,131 + Atu5202 0.61 +0.3
200,153 - Atu5202 0.63 +2.4
200,159 - Atu5202 0.64 +1.4
200,163 - Atu5202 0.64 -0.7
200,163 - Atu5202 0.64 +0.1
200,257 - Atu5202 0.72 -1.9
200,275 + Atu5202 0.74 +0.3
200,275 + Atu5202 0.74 -0.4
200,283 - Atu5202 0.75 -2.4
200,348 + Atu5202 0.81 +0.8
200,353 + Atu5202 0.81 -0.3
200,367 - Atu5202 0.82 -1.5
200,382 - Atu5202 0.84 -0.0
200,440 + Atu5202 0.89 +0.1
200,525 + +0.6
200,525 + +0.1
200,525 + +0.7
200,557 + +0.4
200,602 + +0.2
200,602 + -0.4
200,636 + -0.5
200,691 - -1.2
200,705 + +0.6
200,720 - -1.7
200,801 - Atu5203 0.17 +2.5
200,829 + Atu5203 0.20 +1.9
200,871 + Atu5203 0.24 -0.0
200,926 - Atu5203 0.29 -0.2
200,966 + Atu5203 0.33 -1.2
201,053 + Atu5203 0.41 -1.8
201,053 + Atu5203 0.41 -0.4
201,115 + Atu5203 0.46 +0.1
201,123 - Atu5203 0.47 -0.7
201,398 + Atu5203 0.73 +1.1
201,429 - Atu5203 0.76 +1.1
201,442 - Atu5203 0.77 +0.6
201,488 - Atu5203 0.81 +1.3
201,549 + Atu5203 0.87 +1.4
201,549 + Atu5203 0.87 -1.7
201,554 + Atu5203 0.87 +0.5
201,554 + Atu5203 0.87 +0.1
201,554 + Atu5203 0.87 +2.3
201,554 + Atu5203 0.87 -0.4
201,559 + Atu5203 0.88 +1.7
201,562 - Atu5203 0.88 +0.6
201,602 + -1.5
201,602 + +0.4
201,689 - +0.1
201,715 + -1.2
201,729 + +0.8
201,895 + +1.8
202,007 + Atu5204 0.13 +0.9
202,071 + Atu5204 0.18 +0.1
202,143 + Atu5204 0.23 +0.6
202,153 + Atu5204 0.24 -0.4
202,161 - Atu5204 0.24 -0.6
202,172 - Atu5204 0.25 -1.3
202,232 - Atu5204 0.29 +0.6
202,300 - Atu5204 0.34 +0.4
202,358 - Atu5204 0.38 -0.8
202,447 - Atu5204 0.44 +0.8
202,447 - Atu5204 0.44 -0.1
202,599 + Atu5204 0.54 -0.2
202,607 - Atu5204 0.55 +0.7
202,637 - Atu5204 0.57 +1.0
202,643 + Atu5204 0.57 +0.4
202,648 + Atu5204 0.58 +0.9
202,661 - Atu5204 0.58 +0.2
202,675 - Atu5204 0.59 +0.3
202,678 + Atu5204 0.60 -2.0

Or see this region's nucleotide sequence