Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5039 and Atu5040 are separated by 73 nucleotides Atu5040 and Atu5041 overlap by 4 nucleotides Atu5041 and Atu5042 overlap by 4 nucleotides
Atu5039: Atu5039 - hypothetical protein, at 39,240 to 40,421
Atu5039
Atu5040: Atu5040 - hypothetical protein, at 40,495 to 41,397
Atu5040
Atu5041: Atu5041 - plasmid partitioning protein, at 41,394 to 42,281
Atu5041
Atu5042: Atu5042 - recombinase, at 42,278 to 43,795
Atu5042
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 40.432 kb on + strand at 40.448 kb on - strand at 40.457 kb on + strand at 40.457 kb on + strand at 40.457 kb on + strand at 40.457 kb on + strand at 40.464 kb on - strand at 40.465 kb on - strand at 40.465 kb on - strand at 40.465 kb on - strand at 40.465 kb on - strand at 40.490 kb on - strand at 40.518 kb on + strand at 40.533 kb on - strand at 40.568 kb on + strand at 40.671 kb on + strand, within Atu5040 at 40.680 kb on + strand, within Atu5040 at 40.799 kb on + strand, within Atu5040 at 40.827 kb on - strand, within Atu5040 at 40.841 kb on + strand, within Atu5040 at 40.867 kb on - strand, within Atu5040 at 40.944 kb on + strand, within Atu5040 at 40.958 kb on + strand, within Atu5040 at 40.966 kb on - strand, within Atu5040 at 41.009 kb on + strand, within Atu5040 at 41.036 kb on + strand, within Atu5040 at 41.044 kb on - strand, within Atu5040 at 41.070 kb on + strand, within Atu5040 at 41.075 kb on + strand, within Atu5040 at 41.104 kb on - strand, within Atu5040 at 41.108 kb on + strand, within Atu5040 at 41.116 kb on - strand, within Atu5040 at 41.228 kb on - strand, within Atu5040 at 41.299 kb on + strand, within Atu5040 at 41.307 kb on - strand at 41.350 kb on - strand at 41.365 kb on - strand at 41.430 kb on + strand at 41.444 kb on + strand at 41.445 kb on + strand at 41.458 kb on + strand at 41.547 kb on - strand, within Atu5041 at 41.548 kb on - strand, within Atu5041 at 41.554 kb on + strand, within Atu5041 at 41.579 kb on + strand, within Atu5041 at 41.579 kb on + strand, within Atu5041 at 41.579 kb on + strand, within Atu5041 at 41.587 kb on - strand, within Atu5041 at 41.635 kb on + strand, within Atu5041 at 41.637 kb on + strand, within Atu5041 at 41.637 kb on + strand, within Atu5041 at 41.643 kb on - strand, within Atu5041 at 41.645 kb on - strand, within Atu5041 at 41.645 kb on - strand, within Atu5041 at 41.747 kb on - strand, within Atu5041 at 41.748 kb on - strand, within Atu5041 at 41.770 kb on - strand, within Atu5041 at 41.784 kb on + strand, within Atu5041 at 41.838 kb on - strand, within Atu5041 at 41.860 kb on - strand, within Atu5041 at 41.872 kb on + strand, within Atu5041 at 41.877 kb on + strand, within Atu5041 at 41.885 kb on - strand, within Atu5041 at 41.971 kb on + strand, within Atu5041 at 41.972 kb on - strand, within Atu5041 at 42.039 kb on + strand, within Atu5041 at 42.083 kb on + strand, within Atu5041 at 42.083 kb on + strand, within Atu5041 at 42.101 kb on - strand, within Atu5041 at 42.119 kb on - strand, within Atu5041 at 42.154 kb on - strand, within Atu5041 at 42.161 kb on + strand, within Atu5041 at 42.223 kb on - strand at 42.331 kb on + strand at 42.339 kb on - strand at 42.339 kb on - strand at 42.363 kb on + strand at 42.363 kb on + strand at 42.371 kb on - strand at 42.378 kb on + strand at 42.451 kb on - strand, within Atu5042 at 42.463 kb on - strand, within Atu5042 at 42.471 kb on - strand, within Atu5042 at 42.472 kb on + strand, within Atu5042 at 42.480 kb on - strand, within Atu5042 at 42.523 kb on + strand, within Atu5042 at 42.528 kb on + strand, within Atu5042 at 42.617 kb on - strand, within Atu5042 at 42.668 kb on - strand, within Atu5042 at 42.674 kb on - strand, within Atu5042 at 42.691 kb on - strand, within Atu5042 at 42.701 kb on - strand, within Atu5042 at 42.714 kb on + strand, within Atu5042 at 42.715 kb on + strand, within Atu5042 at 42.821 kb on - strand, within Atu5042 at 42.853 kb on - strand, within Atu5042 at 42.860 kb on + strand, within Atu5042 at 42.879 kb on + strand, within Atu5042 at 42.920 kb on - strand, within Atu5042 at 42.937 kb on - strand, within Atu5042 at 43.016 kb on - strand, within Atu5042 at 43.019 kb on + strand, within Atu5042 at 43.019 kb on + strand, within Atu5042 at 43.025 kb on - strand, within Atu5042 at 43.069 kb on - strand, within Atu5042 at 43.233 kb on + strand, within Atu5042
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 40,432 + +1.4 40,448 - -1.6 40,457 + -0.8 40,457 + +0.4 40,457 + +0.5 40,457 + -1.8 40,464 - +0.2 40,465 - -0.1 40,465 - +0.8 40,465 - +1.0 40,465 - -0.4 40,490 - +1.0 40,518 + -2.2 40,533 - -3.0 40,568 + +1.1 40,671 + Atu5040 0.19 +0.5 40,680 + Atu5040 0.20 -0.7 40,799 + Atu5040 0.34 +0.4 40,827 - Atu5040 0.37 +0.5 40,841 + Atu5040 0.38 -1.1 40,867 - Atu5040 0.41 +1.0 40,944 + Atu5040 0.50 +0.6 40,958 + Atu5040 0.51 +2.5 40,966 - Atu5040 0.52 -1.6 41,009 + Atu5040 0.57 +0.9 41,036 + Atu5040 0.60 -0.5 41,044 - Atu5040 0.61 +0.5 41,070 + Atu5040 0.64 +0.6 41,075 + Atu5040 0.64 -0.6 41,104 - Atu5040 0.67 +1.8 41,108 + Atu5040 0.68 +0.7 41,116 - Atu5040 0.69 -1.7 41,228 - Atu5040 0.81 -0.4 41,299 + Atu5040 0.89 +1.1 41,307 - +0.8 41,350 - +0.3 41,365 - -3.7 41,430 + -1.0 41,444 + -0.9 41,445 + -3.3 41,458 + -0.8 41,547 - Atu5041 0.17 -0.7 41,548 - Atu5041 0.17 -1.5 41,554 + Atu5041 0.18 +0.8 41,579 + Atu5041 0.21 -1.9 41,579 + Atu5041 0.21 -0.2 41,579 + Atu5041 0.21 +1.7 41,587 - Atu5041 0.22 +0.2 41,635 + Atu5041 0.27 +0.6 41,637 + Atu5041 0.27 -2.3 41,637 + Atu5041 0.27 -0.4 41,643 - Atu5041 0.28 +0.8 41,645 - Atu5041 0.28 -0.2 41,645 - Atu5041 0.28 -1.6 41,747 - Atu5041 0.40 -2.4 41,748 - Atu5041 0.40 -0.3 41,770 - Atu5041 0.42 +1.1 41,784 + Atu5041 0.44 +0.3 41,838 - Atu5041 0.50 -0.2 41,860 - Atu5041 0.52 +0.2 41,872 + Atu5041 0.54 +0.8 41,877 + Atu5041 0.54 +1.1 41,885 - Atu5041 0.55 +2.1 41,971 + Atu5041 0.65 -0.9 41,972 - Atu5041 0.65 +0.5 42,039 + Atu5041 0.73 +1.0 42,083 + Atu5041 0.78 -1.7 42,083 + Atu5041 0.78 -1.9 42,101 - Atu5041 0.80 -1.5 42,119 - Atu5041 0.82 -2.5 42,154 - Atu5041 0.86 +0.7 42,161 + Atu5041 0.86 +0.5 42,223 - +0.3 42,331 + -0.4 42,339 - +0.0 42,339 - +1.7 42,363 + -0.3 42,363 + +0.0 42,371 - +2.2 42,378 + +0.3 42,451 - Atu5042 0.11 +1.2 42,463 - Atu5042 0.12 -0.9 42,471 - Atu5042 0.13 +1.4 42,472 + Atu5042 0.13 -0.8 42,480 - Atu5042 0.13 -3.0 42,523 + Atu5042 0.16 +0.3 42,528 + Atu5042 0.16 +0.2 42,617 - Atu5042 0.22 -0.5 42,668 - Atu5042 0.26 +0.8 42,674 - Atu5042 0.26 +0.7 42,691 - Atu5042 0.27 -0.1 42,701 - Atu5042 0.28 -0.2 42,714 + Atu5042 0.29 +0.4 42,715 + Atu5042 0.29 -0.8 42,821 - Atu5042 0.36 -0.4 42,853 - Atu5042 0.38 -2.0 42,860 + Atu5042 0.38 +0.5 42,879 + Atu5042 0.40 -0.6 42,920 - Atu5042 0.42 +0.4 42,937 - Atu5042 0.43 -1.4 43,016 - Atu5042 0.49 +1.2 43,019 + Atu5042 0.49 +0.7 43,019 + Atu5042 0.49 +0.3 43,025 - Atu5042 0.49 +0.2 43,069 - Atu5042 0.52 +0.9 43,233 + Atu5042 0.63 -0.7
Or see this region's nucleotide sequence