Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3851 and Atu3852 are separated by 10 nucleotides Atu3852 and Atu3853 are separated by 153 nucleotides Atu3853 and Atu3854 are separated by 179 nucleotides Atu3854 and Atu3856 are separated by 225 nucleotides Atu3856 and Atu3857 are separated by 43 nucleotides
Atu3851: Atu3851 - hypothetical protein, at 943,008 to 943,310
Atu3851
Atu3852: Atu3852 - hypothetical protein, at 943,321 to 943,587
Atu3852
Atu3853: Atu3853 - hypothetical protein, at 943,741 to 943,917
Atu3853
Atu3854: Atu3854 - hypothetical protein, at 944,097 to 946,196
Atu3854
Atu3856: Atu3856 - hypothetical protein, at 946,422 to 946,721
Atu3856
Atu3857: Atu3857 - hypothetical protein, at 946,765 to 947,562
Atu3857
Position (kb) 944
945
946
947 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 943.125 kb on + strand, within Atu3851 at 943.155 kb on + strand, within Atu3851 at 943.163 kb on - strand, within Atu3851 at 943.206 kb on + strand, within Atu3851 at 943.206 kb on + strand, within Atu3851 at 943.214 kb on + strand, within Atu3851 at 943.222 kb on - strand, within Atu3851 at 943.222 kb on - strand, within Atu3851 at 943.240 kb on + strand, within Atu3851 at 943.312 kb on + strand at 943.356 kb on + strand, within Atu3852 at 943.364 kb on - strand, within Atu3852 at 943.400 kb on - strand, within Atu3852 at 943.400 kb on - strand, within Atu3852 at 943.400 kb on - strand, within Atu3852 at 943.400 kb on - strand, within Atu3852 at 943.421 kb on - strand, within Atu3852 at 943.421 kb on - strand, within Atu3852 at 943.556 kb on + strand, within Atu3852 at 943.564 kb on - strand at 943.660 kb on + strand at 943.678 kb on - strand at 943.697 kb on - strand at 943.697 kb on - strand at 943.754 kb on + strand at 943.803 kb on - strand, within Atu3853 at 943.830 kb on - strand, within Atu3853 at 943.835 kb on - strand, within Atu3853 at 943.835 kb on - strand, within Atu3853 at 943.844 kb on + strand, within Atu3853 at 943.871 kb on + strand, within Atu3853 at 943.871 kb on + strand, within Atu3853 at 943.871 kb on + strand, within Atu3853 at 943.879 kb on - strand, within Atu3853 at 943.879 kb on - strand, within Atu3853 at 943.883 kb on + strand, within Atu3853 at 943.883 kb on + strand, within Atu3853 at 943.926 kb on + strand at 943.934 kb on - strand at 943.955 kb on - strand at 944.023 kb on + strand at 944.090 kb on - strand at 944.117 kb on + strand at 944.120 kb on - strand at 944.122 kb on + strand at 944.125 kb on - strand at 944.125 kb on - strand at 944.125 kb on - strand at 944.125 kb on - strand at 944.128 kb on + strand at 944.135 kb on - strand at 944.152 kb on + strand at 944.180 kb on - strand at 944.182 kb on + strand at 944.182 kb on + strand at 944.190 kb on - strand at 944.190 kb on - strand at 944.190 kb on - strand at 944.190 kb on - strand at 944.242 kb on + strand at 944.255 kb on + strand at 944.265 kb on - strand at 944.324 kb on + strand, within Atu3854 at 944.330 kb on - strand, within Atu3854 at 944.332 kb on - strand, within Atu3854 at 944.422 kb on + strand, within Atu3854 at 944.422 kb on + strand, within Atu3854 at 944.542 kb on + strand, within Atu3854 at 944.634 kb on - strand, within Atu3854 at 944.634 kb on - strand, within Atu3854 at 944.670 kb on - strand, within Atu3854 at 944.682 kb on - strand, within Atu3854 at 944.704 kb on + strand, within Atu3854 at 944.724 kb on - strand, within Atu3854 at 944.738 kb on + strand, within Atu3854 at 944.738 kb on + strand, within Atu3854 at 944.753 kb on - strand, within Atu3854 at 944.760 kb on + strand, within Atu3854 at 944.823 kb on - strand, within Atu3854 at 944.932 kb on - strand, within Atu3854 at 944.959 kb on + strand, within Atu3854 at 944.959 kb on + strand, within Atu3854 at 944.959 kb on + strand, within Atu3854 at 944.967 kb on - strand, within Atu3854 at 944.967 kb on - strand, within Atu3854 at 944.973 kb on - strand, within Atu3854 at 944.982 kb on - strand, within Atu3854 at 945.027 kb on - strand, within Atu3854 at 945.032 kb on - strand, within Atu3854 at 945.101 kb on - strand, within Atu3854 at 945.106 kb on - strand, within Atu3854 at 945.115 kb on + strand, within Atu3854 at 945.161 kb on - strand, within Atu3854 at 945.223 kb on + strand, within Atu3854 at 945.223 kb on + strand, within Atu3854 at 945.223 kb on + strand, within Atu3854 at 945.263 kb on + strand, within Atu3854 at 945.271 kb on - strand, within Atu3854 at 945.322 kb on + strand, within Atu3854 at 945.330 kb on - strand, within Atu3854 at 945.330 kb on - strand, within Atu3854 at 945.334 kb on + strand, within Atu3854 at 945.342 kb on - strand, within Atu3854 at 945.342 kb on - strand, within Atu3854 at 945.400 kb on - strand, within Atu3854 at 945.405 kb on + strand, within Atu3854 at 945.418 kb on + strand, within Atu3854 at 945.418 kb on + strand, within Atu3854 at 945.474 kb on - strand, within Atu3854 at 945.526 kb on + strand, within Atu3854 at 945.553 kb on + strand, within Atu3854 at 945.603 kb on - strand, within Atu3854 at 945.610 kb on + strand, within Atu3854 at 945.615 kb on - strand, within Atu3854 at 945.618 kb on - strand, within Atu3854 at 945.619 kb on - strand, within Atu3854 at 945.629 kb on + strand, within Atu3854 at 945.635 kb on - strand, within Atu3854 at 945.637 kb on - strand, within Atu3854 at 945.683 kb on - strand, within Atu3854 at 945.719 kb on - strand, within Atu3854 at 945.798 kb on + strand, within Atu3854 at 945.805 kb on + strand, within Atu3854 at 945.879 kb on - strand, within Atu3854 at 945.893 kb on - strand, within Atu3854 at 945.969 kb on + strand, within Atu3854 at 945.976 kb on - strand, within Atu3854 at 946.102 kb on - strand at 946.112 kb on - strand at 946.151 kb on + strand at 946.158 kb on + strand at 946.279 kb on + strand at 946.279 kb on + strand at 946.279 kb on + strand at 946.287 kb on - strand at 946.287 kb on - strand at 946.300 kb on + strand at 946.358 kb on + strand at 946.473 kb on - strand, within Atu3856 at 946.489 kb on + strand, within Atu3856 at 946.489 kb on + strand, within Atu3856 at 946.489 kb on + strand, within Atu3856 at 946.489 kb on + strand, within Atu3856 at 946.489 kb on + strand, within Atu3856 at 946.489 kb on + strand, within Atu3856 at 946.489 kb on + strand, within Atu3856 at 946.489 kb on + strand, within Atu3856 at 946.497 kb on - strand, within Atu3856 at 946.497 kb on - strand, within Atu3856 at 946.497 kb on - strand, within Atu3856 at 946.497 kb on - strand, within Atu3856 at 946.497 kb on - strand, within Atu3856 at 946.497 kb on - strand, within Atu3856 at 946.497 kb on - strand, within Atu3856 at 946.497 kb on - strand, within Atu3856 at 946.497 kb on - strand, within Atu3856 at 946.497 kb on - strand, within Atu3856 at 946.543 kb on + strand, within Atu3856 at 946.543 kb on + strand, within Atu3856 at 946.545 kb on + strand, within Atu3856 at 946.551 kb on - strand, within Atu3856 at 946.553 kb on + strand, within Atu3856 at 946.597 kb on + strand, within Atu3856 at 946.605 kb on - strand, within Atu3856 at 946.605 kb on - strand, within Atu3856 at 946.605 kb on - strand, within Atu3856 at 946.679 kb on + strand, within Atu3856 at 946.819 kb on - strand at 946.864 kb on + strand, within Atu3857 at 946.874 kb on - strand, within Atu3857 at 946.965 kb on - strand, within Atu3857 at 946.967 kb on - strand, within Atu3857 at 946.967 kb on - strand, within Atu3857 at 946.967 kb on - strand, within Atu3857 at 946.987 kb on - strand, within Atu3857 at 946.990 kb on + strand, within Atu3857 at 946.998 kb on - strand, within Atu3857 at 946.998 kb on - strand, within Atu3857 at 946.998 kb on - strand, within Atu3857 at 947.003 kb on + strand, within Atu3857 at 947.011 kb on - strand, within Atu3857 at 947.016 kb on + strand, within Atu3857 at 947.016 kb on + strand, within Atu3857 at 947.024 kb on - strand, within Atu3857 at 947.068 kb on + strand, within Atu3857 at 947.075 kb on + strand, within Atu3857 at 947.080 kb on + strand, within Atu3857 at 947.080 kb on + strand, within Atu3857 at 947.080 kb on + strand, within Atu3857 at 947.083 kb on - strand, within Atu3857 at 947.088 kb on - strand, within Atu3857 at 947.088 kb on - strand, within Atu3857 at 947.088 kb on - strand, within Atu3857 at 947.159 kb on - strand, within Atu3857 at 947.180 kb on + strand, within Atu3857 at 947.196 kb on + strand, within Atu3857
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 943,125 + Atu3851 0.39 -1.2 943,155 + Atu3851 0.49 -4.1 943,163 - Atu3851 0.51 +0.2 943,206 + Atu3851 0.65 -0.3 943,206 + Atu3851 0.65 +1.0 943,214 + Atu3851 0.68 +0.3 943,222 - Atu3851 0.71 +0.7 943,222 - Atu3851 0.71 +2.2 943,240 + Atu3851 0.77 -0.2 943,312 + -1.0 943,356 + Atu3852 0.13 -1.9 943,364 - Atu3852 0.16 -2.9 943,400 - Atu3852 0.30 -0.1 943,400 - Atu3852 0.30 -0.2 943,400 - Atu3852 0.30 +0.1 943,400 - Atu3852 0.30 -2.3 943,421 - Atu3852 0.37 +1.4 943,421 - Atu3852 0.37 +1.1 943,556 + Atu3852 0.88 +2.7 943,564 - -1.2 943,660 + -1.8 943,678 - -0.9 943,697 - +0.5 943,697 - +1.0 943,754 + -0.5 943,803 - Atu3853 0.35 +2.7 943,830 - Atu3853 0.50 +0.5 943,835 - Atu3853 0.53 -0.5 943,835 - Atu3853 0.53 -0.1 943,844 + Atu3853 0.58 -0.1 943,871 + Atu3853 0.73 +0.9 943,871 + Atu3853 0.73 +1.0 943,871 + Atu3853 0.73 -1.7 943,879 - Atu3853 0.78 +0.8 943,879 - Atu3853 0.78 -1.7 943,883 + Atu3853 0.80 +1.0 943,883 + Atu3853 0.80 +0.7 943,926 + -3.7 943,934 - -0.4 943,955 - -0.8 944,023 + -1.8 944,090 - -1.0 944,117 + +1.0 944,120 - +1.0 944,122 + -0.8 944,125 - +0.9 944,125 - -1.1 944,125 - -0.6 944,125 - -0.6 944,128 + +1.2 944,135 - +0.1 944,152 + -1.6 944,180 - -1.4 944,182 + +0.5 944,182 + -2.2 944,190 - -1.7 944,190 - +0.4 944,190 - +0.3 944,190 - -1.0 944,242 + +1.6 944,255 + +0.0 944,265 - -0.6 944,324 + Atu3854 0.11 -1.0 944,330 - Atu3854 0.11 -0.9 944,332 - Atu3854 0.11 +1.9 944,422 + Atu3854 0.15 +1.3 944,422 + Atu3854 0.15 -1.3 944,542 + Atu3854 0.21 +0.3 944,634 - Atu3854 0.26 +1.8 944,634 - Atu3854 0.26 -1.8 944,670 - Atu3854 0.27 +0.8 944,682 - Atu3854 0.28 -0.0 944,704 + Atu3854 0.29 +1.3 944,724 - Atu3854 0.30 +0.8 944,738 + Atu3854 0.31 +2.1 944,738 + Atu3854 0.31 -1.4 944,753 - Atu3854 0.31 +1.3 944,760 + Atu3854 0.32 -0.2 944,823 - Atu3854 0.35 -2.0 944,932 - Atu3854 0.40 +0.6 944,959 + Atu3854 0.41 +0.6 944,959 + Atu3854 0.41 +0.3 944,959 + Atu3854 0.41 -1.2 944,967 - Atu3854 0.41 -1.1 944,967 - Atu3854 0.41 +0.5 944,973 - Atu3854 0.42 +1.3 944,982 - Atu3854 0.42 +2.2 945,027 - Atu3854 0.44 +0.3 945,032 - Atu3854 0.45 +0.7 945,101 - Atu3854 0.48 +0.6 945,106 - Atu3854 0.48 -1.8 945,115 + Atu3854 0.48 +0.5 945,161 - Atu3854 0.51 -0.1 945,223 + Atu3854 0.54 -1.9 945,223 + Atu3854 0.54 +0.3 945,223 + Atu3854 0.54 -0.6 945,263 + Atu3854 0.56 +1.0 945,271 - Atu3854 0.56 -2.2 945,322 + Atu3854 0.58 +2.6 945,330 - Atu3854 0.59 -2.7 945,330 - Atu3854 0.59 -2.1 945,334 + Atu3854 0.59 +0.1 945,342 - Atu3854 0.59 +0.6 945,342 - Atu3854 0.59 +3.0 945,400 - Atu3854 0.62 -1.9 945,405 + Atu3854 0.62 -1.1 945,418 + Atu3854 0.63 +0.6 945,418 + Atu3854 0.63 -0.6 945,474 - Atu3854 0.66 -1.5 945,526 + Atu3854 0.68 +0.1 945,553 + Atu3854 0.69 +1.3 945,603 - Atu3854 0.72 -1.3 945,610 + Atu3854 0.72 -2.2 945,615 - Atu3854 0.72 +0.3 945,618 - Atu3854 0.72 -0.3 945,619 - Atu3854 0.72 +1.6 945,629 + Atu3854 0.73 -0.8 945,635 - Atu3854 0.73 -0.3 945,637 - Atu3854 0.73 +0.1 945,683 - Atu3854 0.76 +0.3 945,719 - Atu3854 0.77 +0.4 945,798 + Atu3854 0.81 -1.0 945,805 + Atu3854 0.81 +1.3 945,879 - Atu3854 0.85 +1.1 945,893 - Atu3854 0.86 +2.0 945,969 + Atu3854 0.89 +2.3 945,976 - Atu3854 0.89 +0.0 946,102 - +1.8 946,112 - +0.4 946,151 + -1.3 946,158 + -0.5 946,279 + -0.2 946,279 + +1.0 946,279 + -1.6 946,287 - -1.5 946,287 - -1.0 946,300 + +1.1 946,358 + -2.9 946,473 - Atu3856 0.17 -1.5 946,489 + Atu3856 0.22 -0.6 946,489 + Atu3856 0.22 -1.3 946,489 + Atu3856 0.22 +0.8 946,489 + Atu3856 0.22 -0.6 946,489 + Atu3856 0.22 +1.6 946,489 + Atu3856 0.22 -1.9 946,489 + Atu3856 0.22 +0.3 946,489 + Atu3856 0.22 -0.1 946,497 - Atu3856 0.25 -1.1 946,497 - Atu3856 0.25 +1.5 946,497 - Atu3856 0.25 -1.0 946,497 - Atu3856 0.25 +0.7 946,497 - Atu3856 0.25 +0.1 946,497 - Atu3856 0.25 +0.6 946,497 - Atu3856 0.25 +1.3 946,497 - Atu3856 0.25 -0.4 946,497 - Atu3856 0.25 -1.7 946,497 - Atu3856 0.25 -0.3 946,543 + Atu3856 0.40 -2.3 946,543 + Atu3856 0.40 -1.0 946,545 + Atu3856 0.41 +0.3 946,551 - Atu3856 0.43 +0.1 946,553 + Atu3856 0.44 -0.3 946,597 + Atu3856 0.58 -0.9 946,605 - Atu3856 0.61 +0.3 946,605 - Atu3856 0.61 -1.1 946,605 - Atu3856 0.61 +1.6 946,679 + Atu3856 0.86 +1.6 946,819 - -2.4 946,864 + Atu3857 0.12 +1.0 946,874 - Atu3857 0.14 -1.7 946,965 - Atu3857 0.25 -1.2 946,967 - Atu3857 0.25 +0.0 946,967 - Atu3857 0.25 +0.1 946,967 - Atu3857 0.25 -0.1 946,987 - Atu3857 0.28 -0.6 946,990 + Atu3857 0.28 +0.7 946,998 - Atu3857 0.29 +0.3 946,998 - Atu3857 0.29 -0.8 946,998 - Atu3857 0.29 -1.2 947,003 + Atu3857 0.30 +0.0 947,011 - Atu3857 0.31 -0.6 947,016 + Atu3857 0.31 -0.6 947,016 + Atu3857 0.31 +0.2 947,024 - Atu3857 0.32 +1.5 947,068 + Atu3857 0.38 -0.5 947,075 + Atu3857 0.39 -0.3 947,080 + Atu3857 0.39 -0.2 947,080 + Atu3857 0.39 +2.5 947,080 + Atu3857 0.39 -2.4 947,083 - Atu3857 0.40 -1.0 947,088 - Atu3857 0.40 +0.0 947,088 - Atu3857 0.40 +2.8 947,088 - Atu3857 0.40 -0.1 947,159 - Atu3857 0.49 +0.0 947,180 + Atu3857 0.52 -2.2 947,196 + Atu3857 0.54 +1.7
Or see this region's nucleotide sequence