Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3675 and Atu3676 overlap by 4 nucleotides Atu3676 and Atu3677 overlap by 4 nucleotides
Atu3675: Atu3675 - peptide synthetase, siderophore biosynthesis protein, at 729,769 to 734,331
Atu3675
Atu3676: Atu3676 - siderophore biosynthesis protein, at 734,328 to 735,224
Atu3676
Atu3677: Atu3677 - polyketide synthase, at 735,221 to 736,696
Atu3677
Position (kb) 734
735
736 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 733.328 kb on - strand, within Atu3675 at 733.329 kb on - strand, within Atu3675 at 733.370 kb on - strand, within Atu3675 at 733.485 kb on - strand, within Atu3675 at 733.488 kb on - strand, within Atu3675 at 733.491 kb on + strand, within Atu3675 at 733.514 kb on + strand, within Atu3675 at 733.586 kb on + strand, within Atu3675 at 733.640 kb on - strand, within Atu3675 at 733.698 kb on + strand, within Atu3675 at 733.801 kb on + strand, within Atu3675 at 733.819 kb on - strand, within Atu3675 at 733.837 kb on - strand, within Atu3675 at 733.845 kb on + strand, within Atu3675 at 733.847 kb on - strand, within Atu3675 at 733.859 kb on - strand, within Atu3675 at 733.864 kb on - strand, within Atu3675 at 733.878 kb on - strand at 733.879 kb on - strand at 733.921 kb on + strand at 733.957 kb on + strand at 734.154 kb on - strand at 734.208 kb on - strand at 734.237 kb on + strand at 734.335 kb on + strand at 734.335 kb on + strand at 734.337 kb on + strand at 734.343 kb on - strand at 734.386 kb on + strand at 734.400 kb on - strand at 734.464 kb on - strand, within Atu3676 at 734.464 kb on - strand, within Atu3676 at 734.518 kb on - strand, within Atu3676 at 734.637 kb on - strand, within Atu3676 at 734.663 kb on - strand, within Atu3676 at 734.663 kb on - strand, within Atu3676 at 734.692 kb on + strand, within Atu3676 at 734.717 kb on - strand, within Atu3676 at 734.797 kb on - strand, within Atu3676 at 734.810 kb on - strand, within Atu3676 at 734.889 kb on + strand, within Atu3676 at 734.906 kb on + strand, within Atu3676 at 734.940 kb on + strand, within Atu3676 at 735.046 kb on - strand, within Atu3676 at 735.068 kb on - strand, within Atu3676 at 735.161 kb on - strand at 735.161 kb on - strand at 735.192 kb on + strand at 735.200 kb on - strand at 735.264 kb on - strand at 735.455 kb on - strand, within Atu3677 at 735.537 kb on + strand, within Atu3677 at 735.563 kb on - strand, within Atu3677 at 735.604 kb on + strand, within Atu3677 at 735.711 kb on - strand, within Atu3677 at 735.752 kb on + strand, within Atu3677 at 735.752 kb on + strand, within Atu3677 at 735.760 kb on - strand, within Atu3677 at 735.817 kb on - strand, within Atu3677 at 735.817 kb on - strand, within Atu3677 at 735.927 kb on - strand, within Atu3677 at 735.960 kb on - strand, within Atu3677 at 735.966 kb on + strand, within Atu3677 at 736.006 kb on - strand, within Atu3677 at 736.006 kb on - strand, within Atu3677 at 736.117 kb on + strand, within Atu3677 at 736.217 kb on + strand, within Atu3677
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 733,328 - Atu3675 0.78 -0.3 733,329 - Atu3675 0.78 -1.3 733,370 - Atu3675 0.79 +0.1 733,485 - Atu3675 0.81 -0.5 733,488 - Atu3675 0.82 +1.0 733,491 + Atu3675 0.82 -0.9 733,514 + Atu3675 0.82 +0.2 733,586 + Atu3675 0.84 +1.2 733,640 - Atu3675 0.85 +1.0 733,698 + Atu3675 0.86 +0.7 733,801 + Atu3675 0.88 +0.3 733,819 - Atu3675 0.89 +1.1 733,837 - Atu3675 0.89 +0.8 733,845 + Atu3675 0.89 -0.6 733,847 - Atu3675 0.89 +2.0 733,859 - Atu3675 0.90 -2.0 733,864 - Atu3675 0.90 -3.3 733,878 - +1.3 733,879 - -0.4 733,921 + -1.6 733,957 + +1.6 734,154 - +0.5 734,208 - -2.5 734,237 + -0.3 734,335 + -1.3 734,335 + -1.6 734,337 + +1.4 734,343 - +0.9 734,386 + +0.1 734,400 - -0.6 734,464 - Atu3676 0.15 +0.2 734,464 - Atu3676 0.15 +0.6 734,518 - Atu3676 0.21 +1.3 734,637 - Atu3676 0.34 +0.6 734,663 - Atu3676 0.37 -1.3 734,663 - Atu3676 0.37 -0.2 734,692 + Atu3676 0.41 +2.0 734,717 - Atu3676 0.43 -0.1 734,797 - Atu3676 0.52 -0.0 734,810 - Atu3676 0.54 +1.1 734,889 + Atu3676 0.63 +1.0 734,906 + Atu3676 0.64 +2.0 734,940 + Atu3676 0.68 -1.5 735,046 - Atu3676 0.80 +2.7 735,068 - Atu3676 0.82 +1.1 735,161 - +2.0 735,161 - -0.9 735,192 + +0.9 735,200 - +0.0 735,264 - -0.7 735,455 - Atu3677 0.16 +1.5 735,537 + Atu3677 0.21 +3.2 735,563 - Atu3677 0.23 +0.8 735,604 + Atu3677 0.26 +0.1 735,711 - Atu3677 0.33 -0.1 735,752 + Atu3677 0.36 -1.2 735,752 + Atu3677 0.36 +0.8 735,760 - Atu3677 0.37 +0.8 735,817 - Atu3677 0.40 +1.1 735,817 - Atu3677 0.40 -0.3 735,927 - Atu3677 0.48 +1.7 735,960 - Atu3677 0.50 -0.7 735,966 + Atu3677 0.50 +2.1 736,006 - Atu3677 0.53 -0.6 736,006 - Atu3677 0.53 +0.5 736,117 + Atu3677 0.61 -1.5 736,217 + Atu3677 0.67 +0.7
Or see this region's nucleotide sequence