Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3652 and Atu3653 are separated by 47 nucleotides Atu3653 and Atu3654 are separated by 553 nucleotides Atu3654 and Atu3655 are separated by 336 nucleotides
Atu3652: Atu3652 - hypothetical protein, at 703,047 to 703,889
Atu3652
Atu3653: Atu3653 - hypothetical protein, at 703,937 to 704,173
Atu3653
Atu3654: Atu3654 - hypothetical protein, at 704,727 to 705,242
Atu3654
Atu3655: Atu3655 - antioxidant protein, at 705,579 to 706,145
Atu3655
Position (kb) 704
705
706 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 703.771 kb on + strand, within Atu3652 at 703.776 kb on + strand, within Atu3652 at 703.776 kb on + strand, within Atu3652 at 703.818 kb on - strand at 703.932 kb on - strand at 703.962 kb on - strand, within Atu3653 at 703.998 kb on + strand, within Atu3653 at 704.016 kb on - strand, within Atu3653 at 704.034 kb on + strand, within Atu3653 at 704.115 kb on - strand, within Atu3653 at 704.176 kb on - strand at 704.193 kb on + strand at 704.201 kb on - strand at 704.228 kb on + strand at 704.270 kb on + strand at 704.270 kb on + strand at 704.270 kb on + strand at 704.271 kb on - strand at 704.278 kb on - strand at 704.320 kb on + strand at 704.394 kb on - strand at 704.534 kb on + strand at 704.568 kb on + strand at 704.591 kb on + strand at 704.593 kb on + strand at 704.599 kb on - strand at 704.601 kb on - strand at 704.606 kb on + strand at 704.625 kb on - strand at 704.630 kb on - strand at 704.640 kb on - strand at 704.666 kb on - strand at 704.679 kb on + strand at 704.754 kb on + strand at 704.820 kb on - strand, within Atu3654 at 704.833 kb on - strand, within Atu3654 at 704.868 kb on + strand, within Atu3654 at 704.871 kb on + strand, within Atu3654 at 704.871 kb on + strand, within Atu3654 at 704.878 kb on + strand, within Atu3654 at 704.878 kb on + strand, within Atu3654 at 704.881 kb on - strand, within Atu3654 at 704.886 kb on - strand, within Atu3654 at 704.888 kb on - strand, within Atu3654 at 704.892 kb on + strand, within Atu3654 at 704.988 kb on - strand, within Atu3654 at 705.006 kb on + strand, within Atu3654 at 705.020 kb on + strand, within Atu3654 at 705.039 kb on + strand, within Atu3654 at 705.048 kb on - strand, within Atu3654 at 705.150 kb on - strand, within Atu3654 at 705.237 kb on - strand at 705.251 kb on - strand at 705.258 kb on + strand at 705.280 kb on + strand at 705.346 kb on + strand at 705.356 kb on + strand at 705.369 kb on - strand at 705.374 kb on - strand at 705.496 kb on + strand at 705.506 kb on + strand at 705.571 kb on - strand at 705.632 kb on + strand at 705.688 kb on - strand, within Atu3655 at 705.720 kb on + strand, within Atu3655 at 705.728 kb on - strand, within Atu3655 at 705.745 kb on - strand, within Atu3655 at 705.789 kb on + strand, within Atu3655 at 705.812 kb on - strand, within Atu3655 at 705.839 kb on + strand, within Atu3655 at 705.848 kb on + strand, within Atu3655 at 705.850 kb on - strand, within Atu3655 at 705.907 kb on + strand, within Atu3655 at 705.939 kb on - strand, within Atu3655 at 705.970 kb on + strand, within Atu3655 at 705.978 kb on - strand, within Atu3655 at 705.986 kb on + strand, within Atu3655 at 706.066 kb on + strand, within Atu3655 at 706.074 kb on - strand, within Atu3655 at 706.134 kb on + strand at 706.179 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 703,771 + Atu3652 0.86 +3.4 703,776 + Atu3652 0.86 +1.1 703,776 + Atu3652 0.86 -0.5 703,818 - -0.5 703,932 - +0.3 703,962 - Atu3653 0.11 -0.7 703,998 + Atu3653 0.26 -1.7 704,016 - Atu3653 0.33 -2.6 704,034 + Atu3653 0.41 -0.5 704,115 - Atu3653 0.75 -0.1 704,176 - -0.3 704,193 + +4.3 704,201 - -2.1 704,228 + -0.0 704,270 + +0.5 704,270 + +2.2 704,270 + -0.9 704,271 - -1.3 704,278 - +1.4 704,320 + +0.8 704,394 - -0.6 704,534 + +0.6 704,568 + -0.6 704,591 + +1.3 704,593 + -1.2 704,599 - -2.2 704,601 - +0.1 704,606 + +0.2 704,625 - +0.3 704,630 - -0.8 704,640 - +1.1 704,666 - +0.7 704,679 + -1.0 704,754 + -0.1 704,820 - Atu3654 0.18 +0.3 704,833 - Atu3654 0.21 -0.9 704,868 + Atu3654 0.27 -1.8 704,871 + Atu3654 0.28 -0.1 704,871 + Atu3654 0.28 +1.7 704,878 + Atu3654 0.29 +2.7 704,878 + Atu3654 0.29 +0.4 704,881 - Atu3654 0.30 -1.8 704,886 - Atu3654 0.31 +1.1 704,888 - Atu3654 0.31 +0.3 704,892 + Atu3654 0.32 +0.1 704,988 - Atu3654 0.51 +0.2 705,006 + Atu3654 0.54 -1.0 705,020 + Atu3654 0.57 +1.3 705,039 + Atu3654 0.60 -0.7 705,048 - Atu3654 0.62 -2.5 705,150 - Atu3654 0.82 -2.3 705,237 - +0.4 705,251 - +2.5 705,258 + -0.8 705,280 + -2.5 705,346 + -1.4 705,356 + +1.0 705,369 - -0.2 705,374 - +1.3 705,496 + +4.4 705,506 + +1.9 705,571 - -0.2 705,632 + +0.1 705,688 - Atu3655 0.19 +0.7 705,720 + Atu3655 0.25 +1.0 705,728 - Atu3655 0.26 +1.2 705,745 - Atu3655 0.29 -1.1 705,789 + Atu3655 0.37 +2.5 705,812 - Atu3655 0.41 +1.3 705,839 + Atu3655 0.46 +0.1 705,848 + Atu3655 0.47 -1.8 705,850 - Atu3655 0.48 +0.2 705,907 + Atu3655 0.58 +0.2 705,939 - Atu3655 0.63 -0.2 705,970 + Atu3655 0.69 +0.8 705,978 - Atu3655 0.70 +0.1 705,986 + Atu3655 0.72 -0.3 706,066 + Atu3655 0.86 -0.7 706,074 - Atu3655 0.87 -0.6 706,134 + +1.2 706,179 + -1.4
Or see this region's nucleotide sequence