Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3564 and Atu3565 are separated by 77 nucleotides Atu3565 and Atu3566 are separated by 393 nucleotides Atu3566 and Atu3567 are separated by 69 nucleotides
Atu3564: Atu3564 - endo-1,3-1,4-beta-glycanase, at 617,050 to 618,447
Atu3564
Atu3565: Atu3565 - hypothetical protein, at 618,525 to 619,505
Atu3565
Atu3566: Atu3566 - hypothetical protein, at 619,899 to 620,321
Atu3566
Atu3567: Atu3567 - hypothetical protein, at 620,391 to 620,882
Atu3567
Position (kb) 618
619
620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 617.592 kb on - strand, within Atu3564 at 617.638 kb on + strand, within Atu3564 at 617.712 kb on - strand, within Atu3564 at 617.819 kb on - strand, within Atu3564 at 617.949 kb on - strand, within Atu3564 at 617.955 kb on - strand, within Atu3564 at 617.999 kb on + strand, within Atu3564 at 618.146 kb on - strand, within Atu3564 at 618.146 kb on - strand, within Atu3564 at 618.153 kb on + strand, within Atu3564 at 618.201 kb on + strand, within Atu3564 at 618.222 kb on + strand, within Atu3564 at 618.234 kb on + strand, within Atu3564 at 618.307 kb on + strand, within Atu3564 at 618.315 kb on - strand at 618.419 kb on - strand at 618.487 kb on + strand at 618.489 kb on + strand at 618.495 kb on - strand at 618.510 kb on - strand at 618.540 kb on - strand at 618.615 kb on - strand at 618.648 kb on - strand, within Atu3565 at 618.723 kb on + strand, within Atu3565 at 618.731 kb on - strand, within Atu3565 at 618.902 kb on - strand, within Atu3565 at 618.909 kb on - strand, within Atu3565 at 618.992 kb on + strand, within Atu3565 at 618.992 kb on + strand, within Atu3565 at 619.006 kb on + strand, within Atu3565 at 619.014 kb on - strand, within Atu3565 at 619.063 kb on + strand, within Atu3565 at 619.102 kb on + strand, within Atu3565 at 619.110 kb on - strand, within Atu3565 at 619.175 kb on + strand, within Atu3565 at 619.211 kb on + strand, within Atu3565 at 619.211 kb on + strand, within Atu3565 at 619.219 kb on - strand, within Atu3565 at 619.228 kb on + strand, within Atu3565 at 619.229 kb on - strand, within Atu3565 at 619.236 kb on - strand, within Atu3565 at 619.238 kb on + strand, within Atu3565 at 619.485 kb on + strand at 619.526 kb on + strand at 619.536 kb on + strand at 619.536 kb on + strand at 619.544 kb on - strand at 619.551 kb on + strand at 619.586 kb on + strand at 619.589 kb on - strand at 619.804 kb on + strand at 619.812 kb on - strand at 619.844 kb on - strand at 619.850 kb on + strand at 619.942 kb on + strand, within Atu3566 at 620.017 kb on - strand, within Atu3566 at 620.022 kb on + strand, within Atu3566 at 620.137 kb on - strand, within Atu3566 at 620.171 kb on - strand, within Atu3566 at 620.245 kb on - strand, within Atu3566 at 620.316 kb on + strand at 620.422 kb on - strand at 620.440 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 617,592 - Atu3564 0.39 +0.2 617,638 + Atu3564 0.42 -1.3 617,712 - Atu3564 0.47 +0.2 617,819 - Atu3564 0.55 -1.0 617,949 - Atu3564 0.64 -1.5 617,955 - Atu3564 0.65 -0.2 617,999 + Atu3564 0.68 -1.4 618,146 - Atu3564 0.78 +2.7 618,146 - Atu3564 0.78 -3.2 618,153 + Atu3564 0.79 -1.0 618,201 + Atu3564 0.82 +1.4 618,222 + Atu3564 0.84 +2.0 618,234 + Atu3564 0.85 -0.4 618,307 + Atu3564 0.90 +1.1 618,315 - +0.2 618,419 - +0.3 618,487 + +0.3 618,489 + +0.8 618,495 - -2.9 618,510 - -0.1 618,540 - +0.8 618,615 - +3.4 618,648 - Atu3565 0.13 +1.8 618,723 + Atu3565 0.20 +1.3 618,731 - Atu3565 0.21 +2.7 618,902 - Atu3565 0.38 -0.6 618,909 - Atu3565 0.39 +0.6 618,992 + Atu3565 0.48 +0.8 618,992 + Atu3565 0.48 +0.3 619,006 + Atu3565 0.49 +0.9 619,014 - Atu3565 0.50 -0.2 619,063 + Atu3565 0.55 -0.7 619,102 + Atu3565 0.59 +0.3 619,110 - Atu3565 0.60 -0.3 619,175 + Atu3565 0.66 +0.3 619,211 + Atu3565 0.70 +3.6 619,211 + Atu3565 0.70 -1.1 619,219 - Atu3565 0.71 -0.0 619,228 + Atu3565 0.72 +0.4 619,229 - Atu3565 0.72 +2.3 619,236 - Atu3565 0.72 -0.3 619,238 + Atu3565 0.73 +0.3 619,485 + +0.2 619,526 + +0.4 619,536 + +0.6 619,536 + +1.8 619,544 - -1.0 619,551 + +0.6 619,586 + -0.9 619,589 - -0.5 619,804 + +0.5 619,812 - -0.9 619,844 - -2.0 619,850 + -1.1 619,942 + Atu3566 0.10 -0.6 620,017 - Atu3566 0.28 +0.7 620,022 + Atu3566 0.29 -1.7 620,137 - Atu3566 0.56 -3.4 620,171 - Atu3566 0.64 -0.0 620,245 - Atu3566 0.82 +1.7 620,316 + -1.0 620,422 - -0.8 620,440 + -1.8
Or see this region's nucleotide sequence