Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3390 and Atu3391 are separated by 96 nucleotides Atu3391 and Atu3392 are separated by 113 nucleotides
Atu3390: Atu3390 - ABC transporter substrate-binding protein, at 434,192 to 435,331
Atu3390
Atu3391: Atu3391 - ABC transporter substrate-binding protein, at 435,428 to 436,561
Atu3391
Atu3392: Atu3392 - methyltransferase, at 436,675 to 437,499
Atu3392
Position (kb) 435
436
437 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 434.465 kb on + strand, within Atu3390 at 434.481 kb on + strand, within Atu3390 at 434.500 kb on + strand, within Atu3390 at 434.533 kb on - strand, within Atu3390 at 434.621 kb on + strand, within Atu3390 at 434.872 kb on - strand, within Atu3390 at 434.887 kb on + strand, within Atu3390 at 434.930 kb on - strand, within Atu3390 at 434.996 kb on + strand, within Atu3390 at 435.028 kb on + strand, within Atu3390 at 435.050 kb on - strand, within Atu3390 at 435.103 kb on - strand, within Atu3390 at 435.113 kb on - strand, within Atu3390 at 435.173 kb on + strand, within Atu3390 at 435.173 kb on + strand, within Atu3390 at 435.174 kb on + strand, within Atu3390 at 435.220 kb on + strand at 435.231 kb on + strand at 435.239 kb on - strand at 435.318 kb on + strand at 435.370 kb on + strand at 435.409 kb on + strand at 435.417 kb on - strand at 435.599 kb on - strand, within Atu3391 at 435.629 kb on - strand, within Atu3391 at 435.695 kb on + strand, within Atu3391 at 435.703 kb on - strand, within Atu3391 at 435.712 kb on + strand, within Atu3391 at 435.739 kb on + strand, within Atu3391 at 435.739 kb on + strand, within Atu3391 at 435.739 kb on + strand, within Atu3391 at 435.747 kb on - strand, within Atu3391 at 436.066 kb on + strand, within Atu3391 at 436.236 kb on - strand, within Atu3391 at 436.347 kb on - strand, within Atu3391 at 436.357 kb on - strand, within Atu3391 at 436.377 kb on - strand, within Atu3391 at 436.464 kb on + strand at 436.495 kb on + strand at 436.530 kb on - strand at 436.573 kb on + strand at 436.586 kb on - strand at 436.588 kb on - strand at 436.664 kb on + strand at 436.722 kb on + strand at 436.814 kb on + strand, within Atu3392 at 436.924 kb on + strand, within Atu3392 at 436.924 kb on + strand, within Atu3392 at 436.932 kb on - strand, within Atu3392 at 436.932 kb on - strand, within Atu3392 at 436.942 kb on - strand, within Atu3392 at 436.946 kb on + strand, within Atu3392 at 437.075 kb on - strand, within Atu3392 at 437.229 kb on - strand, within Atu3392 at 437.451 kb on + strand at 437.451 kb on + strand at 437.488 kb on + strand at 437.496 kb on - strand at 437.543 kb on + strand at 437.548 kb on + strand at 437.548 kb on + strand at 437.548 kb on + strand at 437.551 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 434,465 + Atu3390 0.24 -0.3 434,481 + Atu3390 0.25 +1.2 434,500 + Atu3390 0.27 -1.8 434,533 - Atu3390 0.30 +0.1 434,621 + Atu3390 0.38 +0.6 434,872 - Atu3390 0.60 +0.0 434,887 + Atu3390 0.61 -1.4 434,930 - Atu3390 0.65 +0.1 434,996 + Atu3390 0.71 +1.3 435,028 + Atu3390 0.73 +0.2 435,050 - Atu3390 0.75 +0.1 435,103 - Atu3390 0.80 +1.2 435,113 - Atu3390 0.81 -0.3 435,173 + Atu3390 0.86 -1.9 435,173 + Atu3390 0.86 +0.6 435,174 + Atu3390 0.86 -0.1 435,220 + -0.2 435,231 + +1.3 435,239 - +0.9 435,318 + +3.9 435,370 + +0.9 435,409 + -1.1 435,417 - -1.0 435,599 - Atu3391 0.15 +0.3 435,629 - Atu3391 0.18 -0.0 435,695 + Atu3391 0.24 +1.5 435,703 - Atu3391 0.24 +3.0 435,712 + Atu3391 0.25 +2.0 435,739 + Atu3391 0.27 +0.8 435,739 + Atu3391 0.27 -0.6 435,739 + Atu3391 0.27 +1.1 435,747 - Atu3391 0.28 -0.2 436,066 + Atu3391 0.56 +0.6 436,236 - Atu3391 0.71 +1.5 436,347 - Atu3391 0.81 +3.5 436,357 - Atu3391 0.82 +1.2 436,377 - Atu3391 0.84 -0.7 436,464 + -1.5 436,495 + -1.4 436,530 - +0.9 436,573 + +0.2 436,586 - +1.5 436,588 - +0.2 436,664 + -0.3 436,722 + -0.6 436,814 + Atu3392 0.17 -1.3 436,924 + Atu3392 0.30 -1.6 436,924 + Atu3392 0.30 +1.7 436,932 - Atu3392 0.31 -1.3 436,932 - Atu3392 0.31 -0.6 436,942 - Atu3392 0.32 +1.2 436,946 + Atu3392 0.33 -0.3 437,075 - Atu3392 0.48 -2.6 437,229 - Atu3392 0.67 -0.7 437,451 + -1.3 437,451 + -0.7 437,488 + +0.7 437,496 - +0.5 437,543 + +1.6 437,548 + -0.1 437,548 + -0.6 437,548 + +1.3 437,551 - -1.1
Or see this region's nucleotide sequence