Experiment: Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3253 and Atu3254 are separated by 60 nucleotides Atu3254 and Atu3255 are separated by 67 nucleotides Atu3255 and Atu3256 are separated by 75 nucleotides
Atu3253: Atu3253 - ABC transporter substrate binding protein, at 269,828 to 270,802
Atu3253
Atu3254: Atu3254 - dicarboxylate ABC transporter ATPase, at 270,863 to 271,435
Atu3254
Atu3255: Atu3255 - dicarboxylate ABC transporter permease, at 271,503 to 272,846
Atu3255
Atu3256: Atu3256 - zinc-binding dehydrogenase, at 272,922 to 273,968
Atu3256
Position (kb) 271
272
273 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 270.530 kb on - strand, within Atu3253 at 270.535 kb on + strand, within Atu3253 at 270.556 kb on + strand, within Atu3253 at 270.564 kb on - strand, within Atu3253 at 270.569 kb on - strand, within Atu3253 at 270.569 kb on - strand, within Atu3253 at 270.617 kb on + strand, within Atu3253 at 270.629 kb on + strand, within Atu3253 at 270.629 kb on + strand, within Atu3253 at 270.691 kb on - strand, within Atu3253 at 270.763 kb on + strand at 270.771 kb on - strand at 270.771 kb on - strand at 270.891 kb on + strand at 270.947 kb on + strand, within Atu3254 at 270.954 kb on - strand, within Atu3254 at 270.967 kb on + strand, within Atu3254 at 270.982 kb on + strand, within Atu3254 at 270.982 kb on + strand, within Atu3254 at 270.990 kb on - strand, within Atu3254 at 271.145 kb on - strand, within Atu3254 at 271.174 kb on + strand, within Atu3254 at 271.282 kb on - strand, within Atu3254 at 271.317 kb on - strand, within Atu3254 at 271.355 kb on + strand, within Atu3254 at 271.363 kb on - strand, within Atu3254 at 271.404 kb on + strand at 271.420 kb on - strand at 271.437 kb on - strand at 271.459 kb on - strand at 271.520 kb on + strand at 271.528 kb on - strand at 271.584 kb on + strand at 271.651 kb on + strand, within Atu3255 at 271.673 kb on - strand, within Atu3255 at 271.718 kb on + strand, within Atu3255 at 271.718 kb on + strand, within Atu3255 at 271.726 kb on - strand, within Atu3255 at 271.726 kb on - strand, within Atu3255 at 271.726 kb on - strand, within Atu3255 at 271.754 kb on + strand, within Atu3255 at 271.754 kb on + strand, within Atu3255 at 271.764 kb on + strand, within Atu3255 at 271.943 kb on + strand, within Atu3255 at 272.029 kb on - strand, within Atu3255 at 272.124 kb on + strand, within Atu3255 at 272.227 kb on - strand, within Atu3255 at 272.260 kb on + strand, within Atu3255 at 272.260 kb on + strand, within Atu3255 at 272.268 kb on - strand, within Atu3255 at 272.346 kb on - strand, within Atu3255 at 272.369 kb on - strand, within Atu3255 at 272.652 kb on - strand, within Atu3255 at 272.683 kb on + strand, within Atu3255 at 272.691 kb on - strand, within Atu3255 at 272.817 kb on - strand at 272.835 kb on - strand at 272.835 kb on - strand at 272.902 kb on + strand at 272.902 kb on + strand at 272.902 kb on + strand at 272.912 kb on + strand at 272.917 kb on + strand at 272.919 kb on + strand at 273.109 kb on + strand, within Atu3256 at 273.263 kb on + strand, within Atu3256 at 273.409 kb on + strand, within Atu3256 at 273.515 kb on - strand, within Atu3256 at 273.685 kb on - strand, within Atu3256 at 273.827 kb on - strand, within Atu3256
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 270,530 - Atu3253 0.72 +0.5 270,535 + Atu3253 0.73 -0.0 270,556 + Atu3253 0.75 -1.7 270,564 - Atu3253 0.75 +0.4 270,569 - Atu3253 0.76 +1.2 270,569 - Atu3253 0.76 -0.7 270,617 + Atu3253 0.81 +0.4 270,629 + Atu3253 0.82 +1.3 270,629 + Atu3253 0.82 -1.3 270,691 - Atu3253 0.89 +0.5 270,763 + -0.8 270,771 - -2.7 270,771 - -0.3 270,891 + -0.9 270,947 + Atu3254 0.15 +1.5 270,954 - Atu3254 0.16 +1.0 270,967 + Atu3254 0.18 +0.7 270,982 + Atu3254 0.21 -0.9 270,982 + Atu3254 0.21 +0.1 270,990 - Atu3254 0.22 -1.7 271,145 - Atu3254 0.49 -2.7 271,174 + Atu3254 0.54 -0.6 271,282 - Atu3254 0.73 -2.6 271,317 - Atu3254 0.79 +1.5 271,355 + Atu3254 0.86 -1.5 271,363 - Atu3254 0.87 -0.9 271,404 + -0.4 271,420 - -0.1 271,437 - -0.7 271,459 - -1.5 271,520 + -1.6 271,528 - +2.7 271,584 + -1.2 271,651 + Atu3255 0.11 +6.0 271,673 - Atu3255 0.13 -0.0 271,718 + Atu3255 0.16 +0.4 271,718 + Atu3255 0.16 +0.2 271,726 - Atu3255 0.17 +1.2 271,726 - Atu3255 0.17 +1.8 271,726 - Atu3255 0.17 -0.6 271,754 + Atu3255 0.19 +0.3 271,754 + Atu3255 0.19 -0.7 271,764 + Atu3255 0.19 +0.8 271,943 + Atu3255 0.33 -1.0 272,029 - Atu3255 0.39 -0.4 272,124 + Atu3255 0.46 -0.3 272,227 - Atu3255 0.54 -0.9 272,260 + Atu3255 0.56 -0.8 272,260 + Atu3255 0.56 +1.8 272,268 - Atu3255 0.57 -0.6 272,346 - Atu3255 0.63 +0.9 272,369 - Atu3255 0.64 +0.4 272,652 - Atu3255 0.85 -2.7 272,683 + Atu3255 0.88 -1.4 272,691 - Atu3255 0.88 -0.5 272,817 - -0.3 272,835 - -0.2 272,835 - -0.1 272,902 + -0.2 272,902 + -0.0 272,902 + -1.4 272,912 + -1.5 272,917 + -1.3 272,919 + -0.8 273,109 + Atu3256 0.18 -0.4 273,263 + Atu3256 0.33 +1.3 273,409 + Atu3256 0.47 +0.9 273,515 - Atu3256 0.57 +0.3 273,685 - Atu3256 0.73 +1.7 273,827 - Atu3256 0.86 -0.9
Or see this region's nucleotide sequence